/usr/lib/R/site-library/RNeXML/NAMESPACE is in r-cran-rnexml 2.0.7-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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S3method(nexml_read,XMLInternalDocument)
S3method(nexml_read,XMLInternalNode)
S3method(nexml_read,character)
export(add_basic_meta)
export(add_characters)
export(add_meta)
export(add_namespaces)
export(add_trees)
export(flatten_multiphylo)
export(get_characters)
export(get_characters_list)
export(get_citation)
export(get_flat_trees)
export(get_level)
export(get_license)
export(get_metadata)
export(get_namespaces)
export(get_otu)
export(get_otus_list)
export(get_rdf)
export(get_taxa)
export(get_taxa_list)
export(get_trees)
export(get_trees_list)
export(meta)
export(nexml_add)
export(nexml_figshare)
export(nexml_get)
export(nexml_publish)
export(nexml_read)
export(nexml_to_simmap)
export(nexml_validate)
export(nexml_write)
export(read.nexml)
export(reset_id_counter)
export(simmap_to_nexml)
export(taxize_nexml)
export(write.nexml)
import(XML)
import(ape)
import(httr)
import(methods)
import(plyr)
import(reshape2)
import(taxize)
import(uuid)
importFrom(dplyr,"%>%")
importFrom(dplyr,bind_rows)
importFrom(dplyr,left_join)
importFrom(dplyr,matches)
importFrom(dplyr,mutate_)
importFrom(dplyr,select)
importFrom(dplyr,select_)
importFrom(lazyeval,interp)
importFrom(stats,na.omit)
importFrom(stats,setNames)
importFrom(stringr,str_replace)
importFrom(tidyr,spread)
importFrom(utils,capture.output)
importFrom(utils,head)
importFrom(utils,object.size)
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