/usr/lib/R/site-library/vcdExtra/NAMESPACE is in r-cran-vcdextra 0.7-0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 | # last modified 29 Oct 2014 by M. Friendly
# - removed aperm, now that aperm.table is in base
# - removed meanResiduals, which is now in gnm
# + added HLtest & methods
# + added CMHtest
# + added functions in loglin-utilities
# + added logseries functions
# + added seq_mosaic
# + added logLik.loglm, blogits
# - removed as.array generic, now in base
# + added cutfac
# + now required to import: grid
# - removed loddsratio (now in vcd)
# - removed print.Kappa (now in vcd)
# + import from ca; export mpcaplot
# we are a vcd extension; do we need to import gnm here?
import(vcd)
import(gnm)
import(grid)
#import(rgl)
importFrom(MASS, loglm)
# add inports for all base packages
importFrom("grDevices", "hsv")
importFrom("stats", "as.formula", "deviance", "family", "fitted", "formula", "glm", "logLik", "loglin", "model.frame", "na.pass", "nobs", "pchisq", "poisson", "qnorm", "quantile", "reformulate", "residuals", "rstandard", "runif", "terms", "update", "xtabs")
importFrom("utils", "data", "menu", "type.convert")
importFrom("ca", "cacoord", "multilines")
importFrom("grDevices", "rgb")
importFrom("graphics", "abline", "plot", "points", "text")
importFrom("stats", "update.formula")
# joy to the world
export(
expand.dft,expand.table,collapse.table,
mosaic.glm, sieve.glm, assoc.glm,
modFit, modFit.glm, modFit.loglm,
GKgamma,print.GKgamma,
glmlist, loglmlist,
summarise,
logLik.loglm,
# print.Kappa,
mosaic3d, split3d, range3d, center3d,
Kway, Crossings,
datasets,
# loddsratio,
# as.array,
# aperm, meanResiduals,
HLtest, HosmerLemeshow,
CMHtest,
conditional, joint, markov, mutual, saturated,
loglin2formula, loglin2string, seq_loglm,
dlogseries, plogseries, qlogseries, rlogseries,
seq_mosaic,
blogits,
Summarise,
LRstats,
cutfac,
mcaplot,
update.xtabs
)
# basic methods for glm & loglm objects
S3method(mosaic, glm)
S3method(sieve, glm)
S3method(assoc, glm)
S3method(modFit, glm)
S3method(modFit, loglm)
S3method(mosaic, glmlist)
S3method(mosaic, loglmlist)
S3method(update, xtabs)
#S3method(summarise, glm)
#S3method(summarise, glmlist)
#S3method(summarise, loglm)
#S3method(summarise, loglmlist)
S3method(Summarise, glmlist)
S3method(Summarise, loglmlist)
S3method(Summarise, default)
S3method(LRstats, glmlist)
S3method(LRstats, loglmlist)
S3method(LRstats, default)
S3method(coef, glmlist)
S3method(logLik, loglm)
S3method(print, GKgamma)
#S3method(print, Kappa) # moved to vcd
# mosaic3d related
S3method(split3d, shape3d)
S3method(split3d, list)
S3method(mosaic3d, default)
S3method(mosaic3d, loglm)
# logoddsratio related methods -- moved to vcd
#S3method(loddsratio, default)
#S3method(coef, loddsratio)
#S3method(confint, loddsratio)
#S3method(dim, loddsratio)
#S3method(dimnames, loddsratio)
#S3method(print, loddsratio)
#S3method(vcov, loddsratio)
#S3method(as.matrix, loddsratio)
#S3method(as.array, loddsratio)
#S3method(as.data.frame, loddsratio)
# aperm method removed, as this is now in stats
#S3method(aperm, default)
#S3method(aperm, table)
S3method(print, HLtest)
S3method(summary, HLtest)
S3method(plot, HLtest)
S3method(rootogram, HLtest)
S3method(print, CMHtest)
S3method(CMHtest,formula)
S3method(CMHtest,default)
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