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<h1>The RDKit Documentation<a class="headerlink" href="#the-rdkit-documentation" title="Permalink to this headline"></a></h1>
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<li class="toctree-l1"><a class="reference internal" href="Overview.html">An overview of the RDKit</a><ul>
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<li class="toctree-l3"><a class="reference internal" href="Overview.html#open-source-toolkit-for-cheminformatics">Open source toolkit for cheminformatics</a></li>
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<li class="toctree-l2"><a class="reference internal" href="Overview.html#the-contrib-directory">The Contrib Directory</a><ul>
<li class="toctree-l3"><a class="reference internal" href="Overview.html#lef-local-environment-fingerprints">LEF: Local Environment Fingerprints</a></li>
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<li class="toctree-l2"><a class="reference internal" href="GettingStartedInPython.html#molecular-fragments">Molecular Fragments</a></li>
<li class="toctree-l2"><a class="reference internal" href="GettingStartedInPython.html#non-chemical-functionality">Non-Chemical Functionality</a><ul>
<li class="toctree-l3"><a class="reference internal" href="GettingStartedInPython.html#bit-vectors">Bit vectors</a></li>
<li class="toctree-l3"><a class="reference internal" href="GettingStartedInPython.html#discrete-value-vectors">Discrete value vectors</a></li>
<li class="toctree-l3"><a class="reference internal" href="GettingStartedInPython.html#d-grids">3D grids</a></li>
<li class="toctree-l3"><a class="reference internal" href="GettingStartedInPython.html#points">Points</a></li>
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<li class="toctree-l2"><a class="reference internal" href="GettingStartedInPython.html#getting-help">Getting Help</a></li>
<li class="toctree-l2"><a class="reference internal" href="GettingStartedInPython.html#advanced-topics-warnings">Advanced Topics/Warnings</a><ul>
<li class="toctree-l3"><a class="reference internal" href="GettingStartedInPython.html#editing-molecules">Editing Molecules</a></li>
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<li class="toctree-l2"><a class="reference internal" href="GettingStartedInPython.html#miscellaneous-tips-and-hints">Miscellaneous Tips and Hints</a><ul>
<li class="toctree-l3"><a class="reference internal" href="GettingStartedInPython.html#chem-vs-allchem">Chem vs AllChem</a></li>
<li class="toctree-l3"><a class="reference internal" href="GettingStartedInPython.html#the-sssr-problem">The SSSR Problem</a></li>
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<li class="toctree-l2"><a class="reference internal" href="GettingStartedInPython.html#list-of-available-descriptors">List of Available Descriptors</a></li>
<li class="toctree-l2"><a class="reference internal" href="GettingStartedInPython.html#list-of-available-fingerprints">List of Available Fingerprints</a></li>
<li class="toctree-l2"><a class="reference internal" href="GettingStartedInPython.html#feature-definitions-used-in-the-morgan-fingerprints">Feature Definitions Used in the Morgan Fingerprints</a></li>
<li class="toctree-l2"><a class="reference internal" href="GettingStartedInPython.html#license">License</a></li>
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<li class="toctree-l1"><a class="reference internal" href="RDKit_Book.html">The RDKit Book</a><ul>
<li class="toctree-l2"><a class="reference internal" href="RDKit_Book.html#misc-cheminformatics-topics">Misc Cheminformatics Topics</a><ul>
<li class="toctree-l3"><a class="reference internal" href="RDKit_Book.html#aromaticity">Aromaticity</a></li>
<li class="toctree-l3"><a class="reference internal" href="RDKit_Book.html#ring-finding-and-sssr">Ring Finding and SSSR</a></li>
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<li class="toctree-l2"><a class="reference internal" href="RDKit_Book.html#chemical-reaction-handling">Chemical Reaction Handling</a><ul>
<li class="toctree-l3"><a class="reference internal" href="RDKit_Book.html#reaction-smarts">Reaction SMARTS</a><ul>
<li class="toctree-l4"><a class="reference internal" href="RDKit_Book.html#some-features">Some features</a></li>
<li class="toctree-l4"><a class="reference internal" href="RDKit_Book.html#chirality">Chirality</a></li>
<li class="toctree-l4"><a class="reference internal" href="RDKit_Book.html#rules-and-caveats">Rules and caveats</a></li>
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<li class="toctree-l2"><a class="reference internal" href="RDKit_Book.html#the-feature-definition-file-format">The Feature Definition File Format</a><ul>
<li class="toctree-l3"><a class="reference internal" href="RDKit_Book.html#chemical-features">Chemical Features</a></li>
<li class="toctree-l3"><a class="reference internal" href="RDKit_Book.html#syntax-of-the-fdef-file">Syntax of the FDef file</a><ul>
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