This file is indexed.

/usr/share/ is in roary 3.8.0+dfsg-1.

This file is owned by root:root, with mode 0o755.

File Mime Type Owner Mode Size
..
/usr/share/man/man1/iterative_cdhit.1p.gz application/gzip root:root 0o644 1.3 KB
/usr/share/perl5/Bio/ root:root 0o755
/usr/share/perl5/Bio/Roary/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/roary/ root:root 0o755
/usr/share/doc/roary/changelog.Debian.gz application/gzip root:root 0o644 1.0 KB
/usr/share/doc/roary/copyright text/plain root:root 0o644 1.0 KB
/usr/share/lintian/ root:root 0o755
/usr/share/lintian/overrides/ root:root 0o755
/usr/share/lintian/overrides/roary text/plain root:root 0o644 70 bytes
/usr/share/man/ root:root 0o755
/usr/share/man/man1/ root:root 0o755
/usr/share/man/man1/create_pan_genome.1p.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man1/create_pan_genome_plots.1p.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man1/extract_proteome_from_gff.1p.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man1/pan_genome_assembly_statistics.1p.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man1/pan_genome_core_alignment.1p.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man1/pan_genome_post_analysis.1p.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man1/pan_genome_reorder_spreadsheet.1p.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man1/parallel_all_against_all_blastp.1p.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man1/protein_alignment_from_nucleotides.1p.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man1/query_pan_genome.1p.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man1/roary-pan_genome_reorder_spreadsheet.1p.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man1/roary-query_pan_genome.1p.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man1/roary.1p.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man1/transfer_annotation_to_groups.1p.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/ root:root 0o755
/usr/share/man/man3/Bio::Roary.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::AccessoryBinaryFasta.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::AccessoryClustering.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::AnalyseGroups.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::AnnotateGroups.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::AssemblyStatistics.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::BedFromGFFRole.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::ChunkFastaFile.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::ClustersRole.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::CombinedProteome.3pm.gz application/gzip root:root 0o644 1.5 KB
/usr/share/man/man3/Bio::Roary::CommandLine::AssemblyStatistics.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::CommandLine::Common.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::CommandLine::CreatePanGenome.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::CommandLine::ExtractProteomeFromGff.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::CommandLine::GeneAlignmentFromNucleotides.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::CommandLine::IterativeCdhit.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::CommandLine::QueryRoary.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::CommandLine::Roary.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::CommandLine::RoaryCoreAlignment.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::CommandLine::RoaryPostAnalysis.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::CommandLine::RoaryReorderSpreadsheet.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::CommandLine::TransferAnnotationToGroups.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::ContigsToGeneIDsFromGFF.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::Exceptions.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::External::Blastp.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::External::Cdhit.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::External::CheckTools.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::External::Fasttree.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::External::GeneAlignmentFromNucleotides.3pm.gz application/gzip root:root 0o644 1.5 KB
/usr/share/man/man3/Bio::Roary::External::IterativeCdhit.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::External::Mafft.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::External::Makeblastdb.3pm.gz application/gzip root:root 0o644 1.5 KB
/usr/share/man/man3/Bio::Roary::External::Mcl.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::External::PostAnalysis.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::External::Prank.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::ExtractCoreGenesFromSpreadsheet.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFF.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFFs.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::FilterFullClusters.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::FilterUnknownsFromFasta.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::GeneNamesFromGFF.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::GroupLabels.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::GroupStatistics.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::InflateClusters.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::IterativeCdhit.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::JobRunner::Local.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::JobRunner::Parallel.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::JobRunner::Role.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::LookupGeneFiles.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::MergeMultifastaAlignments.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::OrderGenes.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::Output::BlastIdentityFrequency.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL.3pm.gz application/gzip root:root 0o644 1.5 KB
/usr/share/man/man3/Bio::Roary::Output::DifferenceBetweenSets.3pm.gz application/gzip root:root 0o644 1.5 KB
/usr/share/man/man3/Bio::Roary::Output::EMBLHeaderCommon.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::Output::EmblGroups.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::Output::GroupMultifasta.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaNucleotide.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaProtein.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastas.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastasNucleotide.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::Output::NumberOfGroups.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::Output::QueryGroups.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::ParallelAllAgainstAllBlast.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::ParseGFFAnnotationRole.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::PostAnalysis.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::PrepareInputFiles.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::PresenceAbsenceMatrix.3pm.gz application/gzip root:root 0o644 1.5 KB
/usr/share/man/man3/Bio::Roary::QC::Report.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::ReformatInputGFFs.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::ReorderSpreadsheet.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::SampleOrder.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::SequenceLengths.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::SortFasta.3pm.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man3/Bio::Roary::SplitGroups.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man3/Bio::Roary::SpreadsheetRole.3pm.gz application/gzip root:root 0o644 1.3 KB
/usr/share/perl5/ root:root 0o755
/usr/share/perl5/Bio/Roary/AccessoryBinaryFasta.pm text/plain root:root 0o644 4.4 KB
/usr/share/perl5/Bio/Roary/AccessoryClustering.pm text/plain root:root 0o644 3.8 KB
/usr/share/perl5/Bio/Roary/AnalyseGroups.pm text/plain root:root 0o644 3.9 KB
/usr/share/perl5/Bio/Roary/AnnotateGroups.pm text/plain root:root 0o644 11.9 KB
/usr/share/perl5/Bio/Roary/AssemblyStatistics.pm text/plain root:root 0o644 8.4 KB
/usr/share/perl5/Bio/Roary/BedFromGFFRole.pm text/plain root:root 0o644 2.4 KB
/usr/share/perl5/Bio/Roary/ChunkFastaFile.pm text/plain root:root 0o644 3.0 KB
/usr/share/perl5/Bio/Roary/ClustersRole.pm text/plain root:root 0o644 2.1 KB
/usr/share/perl5/Bio/Roary/CombinedProteome.pm text/plain root:root 0o644 1.9 KB
/usr/share/perl5/Bio/Roary/CommandLine/ root:root 0o755
/usr/share/perl5/Bio/Roary/CommandLine/AssemblyStatistics.pm text/plain root:root 0o644 4.5 KB
/usr/share/perl5/Bio/Roary/CommandLine/Common.pm text/plain root:root 0o644 1.4 KB
/usr/share/perl5/Bio/Roary/CommandLine/CreatePanGenome.pm text/plain root:root 0o644 3.2 KB
/usr/share/perl5/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm text/plain root:root 0o644 4.4 KB
/usr/share/perl5/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm text/plain root:root 0o644 4.8 KB
/usr/share/perl5/Bio/Roary/CommandLine/IterativeCdhit.pm text/plain root:root 0o644 5.6 KB
/usr/share/perl5/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm text/plain root:root 0o644 5.2 KB
/usr/share/perl5/Bio/Roary/CommandLine/QueryRoary.pm text/plain root:root 0o644 10.0 KB
/usr/share/perl5/Bio/Roary/CommandLine/Roary.pm text/plain root:root 0o644 15.5 KB
/usr/share/perl5/Bio/Roary/CommandLine/RoaryCoreAlignment.pm text/plain root:root 0o644 5.7 KB
/usr/share/perl5/Bio/Roary/CommandLine/RoaryPostAnalysis.pm text/plain root:root 0o644 10.7 KB
/usr/share/perl5/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm text/plain root:root 0o644 4.5 KB
/usr/share/perl5/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm text/plain root:root 0o644 3.5 KB
/usr/share/perl5/Bio/Roary/ContigsToGeneIDsFromGFF.pm text/plain root:root 0o644 4.5 KB
/usr/share/perl5/Bio/Roary/Exceptions.pm text/plain root:root 0o644 806 bytes
/usr/share/perl5/Bio/Roary/External/ root:root 0o755
/usr/share/perl5/Bio/Roary/External/Blastp.pm text/plain root:root 0o644 2.3 KB
/usr/share/perl5/Bio/Roary/External/Cdhit.pm text/plain root:root 0o644 3.6 KB
/usr/share/perl5/Bio/Roary/External/CheckTools.pm text/plain root:root 0o644 6.0 KB
/usr/share/perl5/Bio/Roary/External/Fasttree.pm text/plain root:root 0o644 2.4 KB
/usr/share/perl5/Bio/Roary/External/GeneAlignmentFromNucleotides.pm text/plain root:root 0o644 4.8 KB
/usr/share/perl5/Bio/Roary/External/IterativeCdhit.pm text/plain root:root 0o644 3.1 KB
/usr/share/perl5/Bio/Roary/External/Mafft.pm text/plain root:root 0o644 2.1 KB
/usr/share/perl5/Bio/Roary/External/Makeblastdb.pm text/plain root:root 0o644 2.5 KB
/usr/share/perl5/Bio/Roary/External/Mcl.pm text/plain root:root 0o644 3.5 KB
/usr/share/perl5/Bio/Roary/External/PostAnalysis.pm text/plain root:root 0o644 6.6 KB
/usr/share/perl5/Bio/Roary/External/Prank.pm text/plain root:root 0o644 2.2 KB
/usr/share/perl5/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm text/plain root:root 0o644 6.3 KB
/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFF.pm text/plain root:root 0o644 7.1 KB
/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFFs.pm text/plain root:root 0o644 3.4 KB
/usr/share/perl5/Bio/Roary/FilterFullClusters.pm text/plain root:root 0o644 4.6 KB
/usr/share/perl5/Bio/Roary/FilterUnknownsFromFasta.pm text/plain root:root 0o644 2.9 KB
/usr/share/perl5/Bio/Roary/GeneNamesFromGFF.pm text/plain root:root 0o644 2.8 KB
/usr/share/perl5/Bio/Roary/GroupLabels.pm text/plain root:root 0o644 2.0 KB
/usr/share/perl5/Bio/Roary/GroupStatistics.pm text/plain root:root 0o644 8.9 KB
/usr/share/perl5/Bio/Roary/InflateClusters.pm text/plain root:root 0o644 3.4 KB
/usr/share/perl5/Bio/Roary/IterativeCdhit.pm text/plain root:root 0o644 4.7 KB
/usr/share/perl5/Bio/Roary/JobRunner/ root:root 0o755
/usr/share/perl5/Bio/Roary/JobRunner/Local.pm text/plain root:root 0o644 1.7 KB
/usr/share/perl5/Bio/Roary/JobRunner/Parallel.pm text/plain root:root 0o644 2.1 KB
/usr/share/perl5/Bio/Roary/JobRunner/Role.pm text/plain root:root 0o644 2.1 KB
/usr/share/perl5/Bio/Roary/LookupGeneFiles.pm text/plain root:root 0o644 1.8 KB
/usr/share/perl5/Bio/Roary/MergeMultifastaAlignments.pm text/plain root:root 0o644 4.7 KB
/usr/share/perl5/Bio/Roary/OrderGenes.pm text/plain root:root 0o644 15.3 KB
/usr/share/perl5/Bio/Roary/Output/ root:root 0o755
/usr/share/perl5/Bio/Roary/Output/BlastIdentityFrequency.pm text/plain root:root 0o644 2.1 KB
/usr/share/perl5/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm text/plain root:root 0o644 3.5 KB
/usr/share/perl5/Bio/Roary/Output/DifferenceBetweenSets.pm text/plain root:root 0o644 4.3 KB
/usr/share/perl5/Bio/Roary/Output/EMBLHeaderCommon.pm text/plain root:root 0o644 1.5 KB
/usr/share/perl5/Bio/Roary/Output/EmblGroups.pm text/plain root:root 0o644 9.8 KB
/usr/share/perl5/Bio/Roary/Output/GroupMultifasta.pm text/plain root:root 0o644 2.5 KB
/usr/share/perl5/Bio/Roary/Output/GroupsMultifastaNucleotide.pm text/plain root:root 0o644 6.9 KB
/usr/share/perl5/Bio/Roary/Output/GroupsMultifastaProtein.pm text/plain root:root 0o644 2.5 KB
/usr/share/perl5/Bio/Roary/Output/GroupsMultifastas.pm text/plain root:root 0o644 1.9 KB
/usr/share/perl5/Bio/Roary/Output/GroupsMultifastasNucleotide.pm text/plain root:root 0o644 3.7 KB
/usr/share/perl5/Bio/Roary/Output/NumberOfGroups.pm text/plain root:root 0o644 5.0 KB
/usr/share/perl5/Bio/Roary/Output/QueryGroups.pm text/plain root:root 0o644 5.0 KB
/usr/share/perl5/Bio/Roary/ParallelAllAgainstAllBlast.pm text/plain root:root 0o644 5.6 KB
/usr/share/perl5/Bio/Roary/ParseGFFAnnotationRole.pm text/plain root:root 0o644 1.4 KB
/usr/share/perl5/Bio/Roary/PostAnalysis.pm text/plain root:root 0o644 15.1 KB
/usr/share/perl5/Bio/Roary/PrepareInputFiles.pm text/plain root:root 0o644 4.7 KB
/usr/share/perl5/Bio/Roary/PresenceAbsenceMatrix.pm text/plain root:root 0o644 3.5 KB
/usr/share/perl5/Bio/Roary/QC/ root:root 0o755
/usr/share/perl5/Bio/Roary/QC/Report.pm text/plain root:root 0o644 6.6 KB
/usr/share/perl5/Bio/Roary/ReformatInputGFFs.pm text/plain root:root 0o644 5.6 KB
/usr/share/perl5/Bio/Roary/ReorderSpreadsheet.pm text/plain root:root 0o644 4.3 KB
/usr/share/perl5/Bio/Roary/SampleOrder.pm text/plain root:root 0o644 1.7 KB
/usr/share/perl5/Bio/Roary/SequenceLengths.pm text/plain root:root 0o644 1.6 KB
/usr/share/perl5/Bio/Roary/SortFasta.pm text/plain root:root 0o644 4.4 KB
/usr/share/perl5/Bio/Roary/SplitGroups.pm text/plain root:root 0o644 8.6 KB
/usr/share/perl5/Bio/Roary/SpreadsheetRole.pm text/plain root:root 0o644 2.3 KB
/usr/share/perl5/Bio/Roary.pm text/plain root:root 0o644 6.9 KB