/usr/share/SBMLToolbox/Simulation/OutputODEFunction.m is in sbmltoolbox 4.1.0-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 | function OutputODEFunction(varargin)
% OutputODEFunction
%
% *NOTE:* This function is deprecated. Use SolveODEFunction instead.
%<!---------------------------------------------------------------------------
% This file is part of SBMLToolbox. Please visit http://sbml.org for more
% information about SBML, and the latest version of SBMLToolbox.
%
% Copyright (C) 2009-2012 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
%
% Copyright (C) 2006-2008 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. University of Hertfordshire, Hatfield, UK
%
% Copyright (C) 2003-2005 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. Japan Science and Technology Agency, Japan
% 3. University of Hertfordshire, Hatfield, UK
%
% SBMLToolbox is free software; you can redistribute it and/or modify it
% under the terms of the GNU Lesser General Public License as published by
% the Free Software Foundation. A copy of the license agreement is provided
% in the file named "LICENSE.txt" included with this software distribution.
%----------------------------------------------------------------------- -->
if (nargin < 1)
error('OutputODEFunction(SBMLModel, ...)\n%s', 'must have at least one argument');
elseif (nargin > 7)
error('OutputODEFunction(SBMLModel, ...)\n%s', 'cannot have more than seven arguments');
end;
if nargin > 1
if (varargin{2} == 1)
error(sprintf('The plot feature is no longer available.\nOutputODEFunction is deprecated.\nUse SolveODEFunction instead.'));
end;
end;
m = varargin{1};
Time_limit = 10;
NoSteps = -1;
outAmt = 0;
outCSV = 1;
Name = '';
switch nargin
case 3
Time_limit = varargin{3};
case 4
Time_limit = varargin{3};
NoSteps = varargin{4};
case 5
Time_limit = varargin{3};
NoSteps = varargin{4};
outCSV = varargin{5};
case 6
Time_limit = varargin{3};
NoSteps = varargin{4};
Name = varargin{6};
outCSV = varargin{5};
case 7
Time_limit = varargin{3};
NoSteps = varargin{4};
outAmt = varargin{7};
outCSV = varargin{5};
Name = varargin{6};
end;
SolveODEFunction(m, Time_limit, NoSteps, outAmt, outCSV, Name);
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