/usr/share/staden/etc/phraprc is in staden-common 2.0.0+b11-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 | # Phrap Gap4 module
# Menu specifications
set_menu gap_menu
set fs ""
catch {set fs [open "|gcphrap" r]}
if {$fs == ""} {
add_cascade {Assembly.Phrap Assembly} 0 0
} else {
catch {close $fs}
add_cascade {Assembly.Phrap Assembly} 12 22
}
add_command {Assembly.Phrap Assembly.Assemble} 12 22 {PhrapAssemble \$io}
add_command {Assembly.Phrap Assembly.Reassemble} 12 22 {PhrapReassemble \$io}
# Defaults
set_def PHRAP.ASS.WIN .phrap_assembly
set_def PHRAP.REASS.WIN .phrap_reassembly
set_def PHRAP.INFILE.WHICH.NAME "Input readings from"
set_def PHRAP.INFILE.WHICH.BUTTONS {list file}
set_def PHRAP.INFILE.WHICH.VALUE 2
set_def PHRAP.INFILE.NAME.NAME "List or file name"
set_def PHRAP.INFILE.NAME.BROWSE "Browse"
set_def PHRAP.INFILE.NAME.VALUE ""
set_def PHRAP.PARAM.NAME "Other phrap parameters"
set_def PHRAP.PARAM.VALUE ""
set_def PHRAP.DEST_DIR.NAME "Destination directory"
set_def PHRAP.DEST_DIR.VALUE "assembly"
set_def PHRAP.QUALITY_CLIP.NAME "Perform quality clipping"
set_def PHRAP.QUALITY_CLIP.VALUE 0
set_def PHRAP.DIFFERENCE_CLIP.NAME "Perform difference clipping"
set_def PHRAP.DIFFERENCE_CLIP.VALUE 1
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