/usr/share/doc/t-coffee-examples/combined_aln.aln.aln is in t-coffee-examples 11.00.8cbe486-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 | CLUSTAL FORMAT for T-COFFEE Version_4.39 [http://www.tcoffee.org], CPU=5.48 sec, SCORE=92, Nseq=19, Len=328
sp|O35205|GRAK_MOUSE M--RFSS--WALVSLVAGVYMSSEC---------------------FHTEIIGGREVQPH
sp|Q7YRZ7|GRAA_BOVIN M-NIPFPFSFPPAICLLLIPGVFPV---------------------SCEGIIGGNEVAPH
sp|P08884|GRAE_MOUSE --------MPPVLILLTLLLPLGAG----------------------AEEIIGGHVVKPH
sp|Q06606|GRZ2_RAT --------MFLFLFFLVAILPVNTE----------------------GGEIIWGTESKPH
sp|P21844|MCPT5_MOUSE -------MHLLTLHLLLLLLGSSTK----------------------AGEIIGGTECIPH
sp|P03953|CFAD_MOUSE M--HSSV---YFVALVILGAAVCAAQ--------------------PRGRILGGQEAAAH
sp|P00773|ELA1_RAT -------MLRFLVFASLVLYGHSTQD-----------------FPETNARVVGGAEARRN
sp|Q00871|CTRB1_PENVA M----IGKLSLLLVCVAVASGNPAAGKPWHWKSPKPLVDPRI-HVNATPRIVGGVEATPH
sp|P08246|ELNE_HUMAN M-TLGRRLACLFLACVLPALLLGGTALA--------------------SEIVGGRRARPH
sp|P20160|CAP7_HUMAN M----TRLTVLALLAGLLASSRAGSSPL--------------------LDIVGGRKARPR
sp|P80015|CAP7_PIG --------------------------------------------------IVGGRRAQPQ
sp|Q03238|GRAM_RAT -------LL-----LLLALKTLW-----------------AV-GNRFEAQIIGGREAVPH
sp|P00757|KLKB4_MOUSE --------MWFLILFLALSLGGIDAA----------------------PPVQSQVDCE-N
sp|Q6H321|KLK2_HORSE --------MWFLVLCLDLSLGETGAL------------------PPIQSRIIGGWECEKH
sp|Q91VE3|KLK7_MOUSE M------GVWLLS-LITVLLSLALET------------------AGQGERIIDGYKCKEG
sp|Q9Y5K2|KLK4_HUMAN MATAGNPWGWFLG-YLILGVAGSLVS-------------------GSCSQIINGEDCSPH
sp|P29786|TRY3_AEDAE M-----NQFLFVSFCALLDSAKVSAATL------------------SSGRIVGGFQIDIA
sp|P35037|TRY3_ANOGA M-ISNKIAILLAVLVVAVACAQARVAQQHRSVQALPRFLPRP-KYDVGHRIVGGFEIDVS
sp|P07338|CTRB1_RAT ------MAFLWLVSCFALVGATFGCGVP--------TI---QPVLTGLSRIVNGEDAIPG
:
sp|O35205|GRAK_MOUSE SRPFMASIQYR----SKHICGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSLSKN-E
sp|Q7YRZ7|GRAA_BOVIN TRRYMALIK------GLKLCAGALIKENWVLTAAHCDL----KGNPQVILGAHSTSHK-E
sp|P08884|GRAE_MOUSE SRPYMAFVKSVDIEGNRRYCGGFLVQDDFVLTAAHCR-----NRTMTVTLGAHNIKAK-E
sp|Q06606|GRZ2_RAT SRPYMAFIKFYDSNSEPHHCGGFLVAKDIVMTAAHCN-----GRNIKVTLGAHNIK-K-Q
sp|P21844|MCPT5_MOUSE SRPYMAYLEIVTSENYLSACSGFLIRRNFVLTAAHCA-----GRSITVLLGAHNKTSK-E
sp|P03953|CFAD_MOUSE ARPYMASVQVN----GTHVCGGTLLDEQWVLSAAHCMDGVTDDDSVQVLLGAHSLSAP-E
sp|P00773|ELA1_RAT SWPSQISLQYLSGGSWYHTCGGTLIRRNWVMTAAHCVS---SQMTFRVVVGDHNLSQN-D
sp|Q00871|CTRB1_PENVA SWPHQAALFIDD----MYFCGGSLISSEWVLTAAHCMD---GAGFVEVVLGAHNIRQN-E
sp|P08246|ELNE_HUMAN AWPFMVSLQLRG----GHFCGATLIAPNFVMSAAHCVANV-NVRAVRVVLGAHNLSRR-E
sp|P20160|CAP7_HUMAN QFPFLASIQNQG----RHFCGGALIHARFVMTAASCFQSQ-NPGVSTVVLGAYDLRRR-E
sp|P80015|CAP7_PIG EFPFLASIQKQG----RPFCAGALVHPRFVLTAASCFRGK-NSGSASVVLGAYDLRQQ-E
sp|Q03238|GRAM_RAT SRPYMVSLQNTK----SHMCGGVLVHQKWVLTAAHCLSE--PLQQLKLVFGLHSLHDP-Q
sp|P00757|KLKB4_MOUSE SQPWHVAVYRF----NKYQCGGVLLDRNWVLTAAHCY-----NDKYQVWLGKNNFLED-E
sp|Q6H321|KLK2_HORSE SKPWQVAVYHQ----GHFQCGGVLVHPQWVLTAAHCM-----SDDYQIWLGRHNLSED-E
sp|Q91VE3|KLK7_MOUSE SHPWQVALLKG----NQLHCGGVLVDKYWVLTAAHCK-----MGQYQVQLGSDKIG---D
sp|Q9Y5K2|KLK4_HUMAN SQPWQAALVME----NELFCSGVLVHPQWVLSAAHCF-----QNSYTIGLGLHSLEADQE
sp|P29786|TRY3_AEDAE EVPHQVSLQRSG----RHFCGGSIISPRWVLTRAHCTTNT-DPAAYTIRAGSTDRT----
sp|P35037|TRY3_ANOGA ETPYQVSLQYFN----SHRCGGSVLNSKWILTAAHCTVNL-QPSSLAVRLGSSRHA----
sp|P07338|CTRB1_RAT SWPWQVSLQDKT---GFHFCGGSLISEDWVVTAAHCGV----KTSDVVVAGEFDQGSD-E
: *.. :: ::: * * : *
sp|O35205|GRAK_MOUSE P-MKQTFEIKKFIPFSRLQSGSA-----------SHDIMLIKLRTAAELNKNVQLLHLGS
sp|Q7YRZ7|GRAA_BOVIN K-LDQVFSIKKAIPYPCFDPQTF-----------EGDLQLLQLEGKATMTKAVGILQLPR
sp|P08884|GRAE_MOUSE E-TQQIIPVAKAIPHPDYNATAF-----------FSDIMLLKLESKAKRTKAVRPLKLPR
sp|Q06606|GRZ2_RAT E-NTQVISVVKAKPHENYDRDSH-----------FNDIMLLKLERKAQLNGVVKTIALPR
sp|P21844|MCPT5_MOUSE D-TWQKLEVEKQFLHPKYDENLV-----------VHDIMLLKLKEKAKLTLGVGTLPLSA
sp|P03953|CFAD_MOUSE P-YKRWYDVQSVVPHPGSRPDSL-----------EDDLILFKLSQNASLGPHVRPLPLQY
sp|P00773|ELA1_RAT G-TEQYVSVQKIMVHPTWNSNNVAA---------GYDIALLRLAQSVTLNNYVQLAVLPQ
sp|Q00871|CTRB1_PENVA A-SQVSITSTDFFTHENWNSWLL-----------TNDIALIRLPSPVSLNSNIKTVKLPS
sp|P08246|ELNE_HUMAN -PTRQVFAVQR-IFENGYDPVNL-----------LNDIVILQLNGSATINANVQVAQLPA
sp|P20160|CAP7_HUMAN RQSRQTFSISS-MSENGYDPQQN-----------LNDLMLLQLDREANLTSSVTILPLPL
sp|P80015|CAP7_PIG -QSRQTFSIRS-ISQNGYDPRQN-----------LNDVLLLQLDREARLTPSVALVPLPP
sp|Q03238|GRAM_RAT D-PGLTFYIKQAIKHPGYNLKY------------ENDLALLKLDGRVKPSKNVKPLALPR
sp|P00757|KLKB4_MOUSE P-SDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPT
sp|Q6H321|KLK2_HORSE D-TAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPT
sp|Q91VE3|KLK7_MOUSE Q-SAQKIKATKSFRHPGYSTKTH-----------VNDIMLVRLDEPVKMSSKVEAVQLPE
sp|Q9Y5K2|KLK4_HUMAN P-GSQMVEASLSVRHPEYNRPLL-----------ANDLMLIKLDESVSESDTIRSISIAS
sp|P29786|TRY3_AEDAE N-GGIIVKVKSVIPHPQYNGDTY-----------NYDFSLLELDESIGFSRSIEAIALPD
sp|P35037|TRY3_ANOGA S-GGTVVRVARVLEHPNYDDSTI-----------DYDFSLMELESELTFSDVVQPVSLPD
sp|P07338|CTRB1_RAT E-NIQVLKIAQVFKNPKFNMFTV-----------RNDITLLKLATPAQFSETVSAVCLPN
*. :..* : :
sp|O35205|GRAK_MOUSE KN--YLRDGTKCQVTGWGTTKPDLLTASDTLREVTVTIISRKRCNSQSYYNHKPVITKDM
sp|Q7YRZ7|GRAA_BOVIN TED-DVKPHTKCHVAGWGSTKKDACQMSNALREANVTVIDRKICNDAQHYNFNPVIDLSM
sp|P08884|GRAE_MOUSE PNA-RVKPGDVCSVAGWGSRSINDTKASARLREAQLVIQEDEECKKR----FRHYTETTE
sp|Q06606|GRZ2_RAT SQD-WVKPGQVCTVAGWGRLAN--CTSSNTLQEVNLEVQKGQKCQDM----SEDYNDSIQ
sp|P21844|MCPT5_MOUSE NFN-FIPPGRMCRAVGWGRTNVNE-PASDTLQEVKMRLQEPQACKH-----FTSFRHNSQ
sp|P03953|CFAD_MOUSE EDK-EVEPGTLCDVAGWGVVTHAG-RRPDVLHQLRVSIMNRTTCNLRTY--HDGVVTINM
sp|P00773|ELA1_RAT EGT-ILANNNPCYITGWGRTRTNG-QLSQTLQQAYLPSVDYSICSSSSY--WGSTVKTTM
sp|Q00871|CTRB1_PENVA SDV---SVGTTVTPTGWGRPSDSASGISDVLRQVNVPVMTNADCDSV----YG-IVGDGV
sp|P08246|ELNE_HUMAN QGR-RLGNGVQCLAMGWGLLGRNR-GIASVLQELNVTVVT-SLCRRS------------N
sp|P20160|CAP7_HUMAN QNA-TVEAGTRCQVAGWGSQRSGG-RLSRFPRFVNVTVTPEDQCRPN------------N
sp|P80015|CAP7_PIG QNA-TVEAGTNCQVAGWGTQRLRR-LFSRFPRVLNVTVTS-NPCLPR------------D
sp|Q03238|GRAM_RAT KPRDKPAEGSRCSTAGWGITHQRG-QLAKSLQELDLRLLDTRMCNNSRF--WNGVLTDSM
sp|P00757|KLKB4_MOUSE EEP---KLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKA----HEMKVTDAM
sp|Q6H321|KLK2_HORSE QEP---KLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARA----YPEKMTEFV
sp|Q91VE3|KLK7_MOUSE HCE---PPGTSCTVSGWGTTTSPDVTFPSDLMCSDVKLISSRECKKV----YKDLLGKTM
sp|Q9Y5K2|KLK4_HUMAN QCP---TAGNSCLVSGWGLLANG--RMPTVLQCVNVSVVSEEVCSKL----YDPLYHPSM
sp|P29786|TRY3_AEDAE ASE-TVADGAMCTVSGWGDTKNVF-EMNTLLRAVNVPSYNQAECAAALV--NVVPVTEQM
sp|P35037|TRY3_ANOGA QDE-AVEDGTMTIVSGWGNTQSAA-ESNAILRAANVPTVNQKECTIAYS--SSGGITDRM
sp|P07338|CTRB1_RAT VDD-DFPPGTVCATTGWGKTKYNALKTPEKLQQAALPIVSEADCKKS----WGSKITDVM
*** : *
sp|O35205|GRAK_MOUSE ICAGDARGQKDSCKGDSGGPLICKG----IFHALVSQGY-KCGI-AKKPGIYTLLTKKYQ
sp|Q7YRZ7|GRAA_BOVIN ICAGGRKGEDDSCEGDSGSPLICDN----VFRGVTSFG--KCGN-PQKPGIYILLTKKHL
sp|P08884|GRAE_MOUSE ICAGDLKKIKTPFKGDSGGPLVCDN----KAYGLLAYAK-N--R-TISSGVFTKIVH-FL
sp|Q06606|GRZ2_RAT LCVGNPSEGKATGKGDSGGPFVCDG----VAQGIVSYRL-C--T-GTLPRVFTRISS-FI
sp|P21844|MCPT5_MOUSE LCVGNPKKMQNVYKGDSGGPLLCAG----IAQGIASYVH-R--N-AKPPAVFTRISH-YR
sp|P03953|CFAD_MOUSE MCAE--SNRRDTCRGDSGSPLVCGD----AVEGVVTWGSRVCGN-GKKPGVYTRVSS-YR
sp|P00773|ELA1_RAT VCAGG-DGVRSGCQGDSGGPLHCLVNGQYSVHGVTSFVSSMGCNVSKKPTVFTRVSA-YI
sp|Q00871|CTRB1_PENVA VCIDG-TGGKSTCNGDSGGPLNLNG----MTYGITSFGSSAGCEKG-YPAAFTRVYY-YL
sp|P08246|ELNE_HUMAN VCTLVRGRQAGVCFGDSGSPLVCNG----LIHGIASFVRGGCAS-GLYPDAFAPVAQ-FV
sp|P20160|CAP7_HUMAN VCTGVLTRRGGICNGDGGTPLVCEG----LAHGVASFSLGPCGR---GPDFFTRVAL-FR
sp|P80015|CAP7_PIG MCIGVFSRRGRISQGDRGTPLVCNG----LAQGVASFLRRRFRR---SSGFFTRVAL-FR
sp|Q03238|GRAM_RAT LCLKAGAKGQAPCKGDSGGPLVCGK-G--KVDGILSFSSKNCTD-IFKPTVATAVAP-YS
sp|P00757|KLKB4_MOUSE LCAGEMDGGSYTCEHDSGGPLICDG----ILQGITSWGPEPCGE-PTEPSVYTKLIK-FS
sp|Q6H321|KLK2_HORSE LCATHRDDSGSICLGDSGGALICDG----VFQGITSWGYSECAD-FNDNFVFTKVMP-HL
sp|Q91VE3|KLK7_MOUSE LCAGIPDSKTNTCNGDSGGPLVCND----TLQGLVSWGTYPCGQ-PNDPGVYTQVCK-YK
sp|Q9Y5K2|KLK4_HUMAN FCAGGGQDQKDSCNGDSGGPLICNG----YLQGLVSFGKAPCGQ-VGVPGVYTNLCK-FT
sp|P29786|TRY3_AEDAE ICAGYAAGGKDSCQGDSGGPLVSGD----KLVGVVSWGK-GCAL-PNLPGVYARVST-VR
sp|P35037|TRY3_ANOGA LCAGYKRGGKDACQGDSGGPLVVDG----KLVGVVSWGF-GCAM-PGYPGVYARVAV-VR
sp|P07338|CTRB1_RAT TCAG--ASGVSSCMGDSGGPLVCQKDGVWTLAGIVSWGSGVCS-T-STPAVYSRVTA-LM
* * * .: .: : :
sp|O35205|GRAK_MOUSE TWIKSKLAPSRAH---------------
sp|Q7YRZ7|GRAA_BOVIN NWIKKTIAGAI-----------------
sp|P08884|GRAE_MOUSE PWISRNMKLL------------------
sp|Q06606|GRZ2_RAT PWIQKTMKVLQQS---------------
sp|P21844|MCPT5_MOUSE PWINKILREN------------------
sp|P03953|CFAD_MOUSE MWIENITNGNMTS---------------
sp|P00773|ELA1_RAT SWMNNVIAYT------------------
sp|Q00871|CTRB1_PENVA DWIQQKTGVTP-----------------
sp|P08246|ELNE_HUMAN NWIDSIIQRSEDNPCPHPRDPDPASRTH
sp|P20160|CAP7_HUMAN DWIDGVLNNPGPG----PA---------
sp|P80015|CAP7_PIG NWIDSVLNNPP-----------------
sp|Q03238|GRAM_RAT SWIRKVIGRWSPQPLT------------
sp|P00757|KLKB4_MOUSE SWIRETMANNP-----------------
sp|Q6H321|KLK2_HORSE KWIKETIEKNS-----------------
sp|Q91VE3|KLK7_MOUSE RWVMETMKTHR-----------------
sp|Q9Y5K2|KLK4_HUMAN EWIEKTVQAS------------------
sp|P29786|TRY3_AEDAE QWIREVSEV-------------------
sp|P35037|TRY3_ANOGA DWVRENSGA-------------------
sp|P07338|CTRB1_RAT PWVQQILEAN------------------
*:
|