/usr/share/doc/t-coffee-examples/p120.aln is in t-coffee-examples 11.00.8cbe486-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 | CLUSTAL FORMAT for T-COFFEE Version_4.32 [http://www.tcoffee.org], CPU=18.23 sec, SCORE=48, Nseq=19, Len=331
sp|O35205|GRAK_MOUSE M---------RFSSWALVSLVAG-----------------VYMSSECFHTEIIGGREVQP
sp|Q7YRZ7|GRAA_BOVIN M---N---IPFPFSFPPAICLLL-----------------IPGVFPVSCEGIIGGNEVAP
sp|P08884|GRAE_MOUSE M--------------PPVLILLT-----------------LLLPLGAGAEEIIGGHVVKP
sp|Q06606|GRZ2_RAT M--------------FLFLFFLV-----------------AILPVNTEGGEIIWGTESKP
sp|P21844|MCPT5_MOUSE M-------------HLLTLHLLL-----------------LLLGSSTKAGEIIGGTECIP
sp|P03953|CFAD_MOUSE M---------HSSVYFVALVILG-----------------AAVCAAQPRGRILGGQEAAA
sp|P00773|ELA1_RAT M------LR--FLVFASLVLYGH-----------------STQDFPETNARVVGGAEARR
sp|Q00871|CTRB1_PENVA M---IGKLS--LLLVCVAVASGNP-AAGKPWHWKSPKPLVDPRIHVNATPRIVGGVEATP
sp|P08246|ELNE_HUMAN M-----TLGRRLACLFLACVLPA-----------------LLLGGTALASEIVGGRRARP
sp|P20160|CAP7_HUMAN M--------TRLTVLALLAGLLA-----------------SSRAGSSPLLDIVGGRKARP
sp|P80015|CAP7_PIG ---------------------------------------------------IVGGRRAQP
sp|Q03238|GRAM_RAT --------------LLLLLALKT-----------------LWAVGNRFEAQIIGGREAVP
sp|P00757|KLKB4_MOUSE M---------WFLI--LFLALSLG----------------GIDA-----APPVQSQVDCE
sp|Q6H321|KLK2_HORSE M---------WFLV--LCLDLSLG----------------ETGALPPIQSRIIGGWECEK
sp|Q91VE3|KLK7_MOUSE M-------GVWLLS--LITVLLSL-----------------ALETAGQGERIIDGYKCKE
sp|Q9Y5K2|KLK4_HUMAN MATAGN--PWGWFL--GYLILGVA-----------------GSLVSGSCSQIINGEDCSP
sp|P29786|TRY3_AEDAE M------N-QFLFVSFCALLDSAKVSAATL-----------------SSGRIVGGFQIDI
sp|P35037|TRY3_ANOGA M--ISNKI-AILLAVLVVAVACAQARVAQQHRSVQALPRFLPRPKYDVGHRIVGGFEIDV
sp|P07338|CTRB1_RAT M-----AF---LWLVSCFALVGATFGCGVP----------TIQPVLTGLSRIVNGEDAIP
: .
sp|O35205|GRAK_MOUSE HSRPFMASIQYR----SKHICGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSLSKN-
sp|Q7YRZ7|GRAA_BOVIN HTRRYMALI--K----GLKLCAGALIKENWVLTAAHCDL----KGNPQVILGAHSTSHK-
sp|P08884|GRAE_MOUSE HSRPYMAFVKSVDIEGNRRYCGGFLVQDDFVLTAAHCRN-----RTMTVTLGAHNIKAK-
sp|Q06606|GRZ2_RAT HSRPYMAFIKFYDSNSEPHHCGGFLVAKDIVMTAAHCNG-----RNIKVTLGAHNIKKQ-
sp|P21844|MCPT5_MOUSE HSRPYMAYLEIVTSENYLSACSGFLIRRNFVLTAAHCAG-----RSITVLLGAHNKTSK-
sp|P03953|CFAD_MOUSE HARPYMASVQVN----GTHVCGGTLLDEQWVLSAAHCMDGVTDDDSVQVLLGAHSLSAP-
sp|P00773|ELA1_RAT NSWPSQISLQYLSGGSWYHTCGGTLIRRNWVMTAAHCVSSQ---MTFRVVVGDHNLSQN-
sp|Q00871|CTRB1_PENVA HSWPHQAALFIDD----MYFCGGSLISSEWVLTAAHCMDGA---GFVEVVLGAHNIRQN-
sp|P08246|ELNE_HUMAN HAWPFMVSLQLRG----GHFCGATLIAPNFVMSAAHCVANV-NVRAVRVVLGAHNLSRR-
sp|P20160|CAP7_HUMAN RQFPFLASIQNQG----RHFCGGALIHARFVMTAASCFQSQ-NPGVSTVVLGAYDLRRR-
sp|P80015|CAP7_PIG QEFPFLASIQKQG----RPFCAGALVHPRFVLTAASCFRGK-NSGSASVVLGAYDLRQQ-
sp|Q03238|GRAM_RAT HSRPYMVSLQNTK----SHMCGGVLVHQKWVLTAAHCLSEP--LQQLKLVFGLHSLHDP-
sp|P00757|KLKB4_MOUSE NSQPWHVAVYRF----NKYQCGGVLLDRNWVLTAAHCYN-----DKYQVWLGKNNFLED-
sp|Q6H321|KLK2_HORSE HSKPWQVAVYHQ----GHFQCGGVLVHPQWVLTAAHCMS-----DDYQIWLGRHNLSED-
sp|Q91VE3|KLK7_MOUSE GSHPWQVALLKG----NQLHCGGVLVDKYWVLTAAHCKM-----GQYQVQLGSDKIG---
sp|Q9Y5K2|KLK4_HUMAN HSQPWQAALVME----NELFCSGVLVHPQWVLSAAHCFQ-----NSYTIGLGLHSLEADQ
sp|P29786|TRY3_AEDAE AEVPHQVSLQRSG----RHFCGGSIISPRWVLTRAHCTTNT-DPAAYTIRAGS---TD-R
sp|P35037|TRY3_ANOGA SETPYQVSLQYFN----SHRCGGSVLNSKWILTAAHCTVNL-QPSSLAVRLGS---SR-H
sp|P07338|CTRB1_RAT GSWPWQVSLQDKT---GFHFCGGSLISEDWVVTAAHCGVKT-S---DVVVAGEFDQGSD-
: *.. :: ::: * * : *
sp|O35205|GRAK_MOUSE EPM-KQTFEIKKFIPFSRLQSG-----------SA--SHDIMLIKLRTAAELNKNVQLLH
sp|Q7YRZ7|GRAA_BOVIN EKL-DQVFSIKKAIPYPCFDPQ-----------TF--EGDLQLLQLEGKATMTKAVGILQ
sp|P08884|GRAE_MOUSE EET-QQIIPVAKAIPHPDYNAT-----------AF--FSDIMLLKLESKAKRTKAVRPLK
sp|Q06606|GRZ2_RAT ENT--QVISVVKAKPHENYDRD-----------SH--FNDIMLLKLERKAQLNGVVKTIA
sp|P21844|MCPT5_MOUSE EDT-WQKLEVEKQFLHPKYDEN-----------LV--VHDIMLLKLKEKAKLTLGVGTLP
sp|P03953|CFAD_MOUSE EPY-KRWYDVQSVVPHPGSRPD-----------SL--EDDLILFKLSQNASLGPHVRPLP
sp|P00773|ELA1_RAT DGT-EQYVSVQKIMVHPTWNSN-----------NVAAGYDIALLRLAQSVTLNNYVQLAV
sp|Q00871|CTRB1_PENVA EAS-QVSITSTDFFTHENWNSW-----------LL--TNDIALIRLPSPVSLNSNIKTVK
sp|P08246|ELNE_HUMAN EPT-RQVFAVQR-IFENGYDPV-----------NL--LNDIVILQLNGSATINANVQVAQ
sp|P20160|CAP7_HUMAN ERQSRQTFSISS-MSENGYDPQ-----------QN--LNDLMLLQLDREANLTSSVTILP
sp|P80015|CAP7_PIG EQS-RQTFSIRS-ISQNGYDPR-----------QN--LNDVLLLQLDREARLTPSVALVP
sp|Q03238|GRAM_RAT QDP-GLTFYIKQAIKHPGYNLK------------Y--ENDLALLKLDGRVKPSKNVKPLA
sp|P00757|KLKB4_MOUSE EPS-DQHRLVSKAIPHPDFNMSLLNEHTPQPEDDY--SNDLMLLRLSKPADITDVVKPIT
sp|Q6H321|KLK2_HORSE EDT-AQFHQVSDSFLDPQFDLSLLKKKYLRPYDDI--SHDLMLLRLAQPARITDAVKILD
sp|Q91VE3|KLK7_MOUSE DQS-AQKIKATKSFRHPGYSTK-----------TH--VNDIMLVRLDEPVKMSSKVEAVQ
sp|Q9Y5K2|KLK4_HUMAN EPG-SQMVEASLSVRHPEYNRP-----------LL--ANDLMLIKLDESVSESDTIRSIS
sp|P29786|TRY3_AEDAE TNG-GIIVKVKSVIPHPQYNGD-----------TY--NYDFSLLELDESIGFSRSIEAIA
sp|P35037|TRY3_ANOGA ASG-GTVVRVARVLEHPNYDDS-----------TI--DYDFSLMELESELTFSDVVQPVS
sp|P07338|CTRB1_RAT EEN-IQVLKIAQVFKNPKFNMF-----------TV--RNDITLLKLATPAQFSETVSAVC
*. :..* :
sp|O35205|GRAK_MOUSE LGSKN--YLRDGTKCQVTGWGTTKPDLLTASDTLREVTVTIISRKRCNSQSYYNHKPVIT
sp|Q7YRZ7|GRAA_BOVIN LPRTED-DVKPHTKCHVAGWGSTKKDACQMSNALREANVTVIDRKICNDAQHYNFNPVID
sp|P08884|GRAE_MOUSE LPRPNA-RVKPGDVCSVAGWGSRSINDTKASARLREAQLVIQEDEECKKRF----RHYTE
sp|Q06606|GRZ2_RAT LPRSQD-WVKPGQVCTVAGWGRLAN--CTSSNTLQEVNLEVQKGQKCQDMS----EDYND
sp|P21844|MCPT5_MOUSE LSANFN-FIPPGRMCRAVGWGRTNVNE-PASDTLQEVKMRLQEPQACKHF-----TSFRH
sp|P03953|CFAD_MOUSE LQYEDK-EVEPGTLCDVAGWGVVTHAG-RRPDVLHQLRVSIMNRTTCNLRTY--HDGVVT
sp|P00773|ELA1_RAT LPQEGT-ILANNNPCYITGWGRTRTN-GQLSQTLQQAYLPSVDYSICSSSSY--WGSTVK
sp|Q00871|CTRB1_PENVA LPSSDV---SVGTTVTPTGWGRPSDSASGISDVLRQVNVPVMTNADCDSVY-----GIVG
sp|P08246|ELNE_HUMAN LPAQGR-RLGNGVQCLAMGWGLLGRN-RGIASVLQELNVTVVT-SLCRR-----------
sp|P20160|CAP7_HUMAN LPLQNA-TVEAGTRCQVAGWGSQRSG-GRLSRFPRFVNVTVTPEDQCRP-----------
sp|P80015|CAP7_PIG LPPQNA-TVEAGTNCQVAGWGTQRLR-RLFSRFPRVLNVTVTS-NPCLP-----------
sp|Q03238|GRAM_RAT LPRKPRDKPAEGSRCSTAGWGITHQRG-QLAKSLQELDLRLLDTRMCNNSRF--WNGVLT
sp|P00757|KLKB4_MOUSE LPTEEP---KLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAH----EMKVT
sp|Q6H321|KLK2_HORSE LPTQEP---KLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAY----PEKMT
sp|Q91VE3|KLK7_MOUSE LPEHCE---PPGTSCTVSGWGTTTSPDVTFPSDLMCSDVKLISSRECKKVY----KDLLG
sp|Q9Y5K2|KLK4_HUMAN IASQCP---TAGNSCLVSGWGLLANG--RMPTVLQCVNVSVVSEEVCSKLY----DPLYH
sp|P29786|TRY3_AEDAE LPDASE-TVADGAMCTVSGWGDTKNV-FEMNTLLRAVNVPSYNQAECAAALV--NVVPVT
sp|P35037|TRY3_ANOGA LPDQDE-AVEDGTMTIVSGWGNTQSA-AESNAILRAANVPTVNQKECTIAYS--SSGGIT
sp|P07338|CTRB1_RAT LPNVDD-DFPPGTVCATTGWGKTKYNALKTPEKLQQAALPIVSEADCKKSW----GSKIT
: *** : *
sp|O35205|GRAK_MOUSE KDMICAGDARGQKDSCKGDSGGPLIC--KG--IFHALVSQGYK--CGIAKKPGIYTLLTK
sp|Q7YRZ7|GRAA_BOVIN LSMICAGGRKGEDDSCEGDSGSPLIC--DN--VFRGVTSFGK---CGNPQKPGIYILLTK
sp|P08884|GRAE_MOUSE TTEICAGDLKKIKTPFKGDSGGPLVC--DN--KAYGLLAYAKN----RTISSGVFTKIVH
sp|Q06606|GRZ2_RAT SIQLCVGNPSEGKATGKGDSGGPFVC--DG--VAQGIVSYRLC----TGTLPRVFTRISS
sp|P21844|MCPT5_MOUSE NSQLCVGNPKKMQNVYKGDSGGPLLC--AG--IAQGIASYVHR----NAKPPAVFTRISH
sp|P03953|CFAD_MOUSE INMMCAE--SNRRDTCRGDSGSPLVC--GD--AVEGVVTWGSR-VCGNGKKPGVYTRVSS
sp|P00773|ELA1_RAT TTMVCAGG-DGVRSGCQGDSGGPLHCLVNGQYSVHGVTSFVSSMGCNVSKKPTVFTRVSA
sp|Q00871|CTRB1_PENVA DGVVCIDG-TGGKSTCNGDSGGPLNL--NG--MTYGITSFGSS-AGCEKGYPAAFTRVYY
sp|P08246|ELNE_HUMAN -SNVCTLVRGRQAGVCFGDSGSPLVC--NG--LIHGIASFVRG-GCASGLYPDAFAPVAQ
sp|P20160|CAP7_HUMAN -NNVCTGVLTRRGGICNGDGGTPLVC--EG--LAHGVASFSLG-PCGR--GPDFFTRVAL
sp|P80015|CAP7_PIG -RDMCIGVFSRRGRISQGDRGTPLVC--NG--LAQGVASFLRR-RFRR--SSGFFTRVAL
sp|Q03238|GRAM_RAT DSMLCLKAGAKGQAPCKGDSGGPLVC--GK-GKVDGILSFSSK-NCTDIFKPTVATAVAP
sp|P00757|KLKB4_MOUSE DAMLCAGEMDGGSYTCEHDSGGPLIC--DG--ILQGITSWGPE-PCGEPTEPSVYTKLIK
sp|Q6H321|KLK2_HORSE EFVLCATHRDDSGSICLGDSGGALIC--DG--VFQGITSWGYS-ECADFNDNFVFTKVMP
sp|Q91VE3|KLK7_MOUSE KTMLCAGIPDSKTNTCNGDSGGPLVC--ND--TLQGLVSWGTY-PCGQPNDPGVYTQVCK
sp|Q9Y5K2|KLK4_HUMAN PSMFCAGGGQDQKDSCNGDSGGPLIC--NG--YLQGLVSFGKA-PCGQVGVPGVYTNLCK
sp|P29786|TRY3_AEDAE EQMICAGYAAGGKDSCQGDSGGPLVS--GD--KLVGVVSWGKG--CALPNLPGVYARVST
sp|P35037|TRY3_ANOGA DRMLCAGYKRGGKDACQGDSGGPLVV--DG--KLVGVVSWGFG--CAMPGYPGVYARVAV
sp|P07338|CTRB1_RAT DVMTCAGA--SGVSSCMGDSGGPLVCQKDGVWTLAGIVSWGSG-VCS-TSTPAVYSRVTA
* * * .: .: : :
sp|O35205|GRAK_MOUSE KYQTWIKSKLAPSRAH---------------
sp|Q7YRZ7|GRAA_BOVIN KHLNWIKKTIAGAI-----------------
sp|P08884|GRAE_MOUSE -FLPWISRNMKLL------------------
sp|Q06606|GRZ2_RAT -FIPWIQKTMKVLQQS---------------
sp|P21844|MCPT5_MOUSE -YRPWINKILREN------------------
sp|P03953|CFAD_MOUSE -YRMWIENITNGNMTS---------------
sp|P00773|ELA1_RAT -YISWMNNVIAYT------------------
sp|Q00871|CTRB1_PENVA -YLDWIQQKTGVTP-----------------
sp|P08246|ELNE_HUMAN -FVNWIDSIIQRSEDNPCPHPRDPDPASRTH
sp|P20160|CAP7_HUMAN -FRDWIDGVLNNPGPGP-------------A
sp|P80015|CAP7_PIG -FRNWIDSVLNNPP-----------------
sp|Q03238|GRAM_RAT -YSSWIRKVIGRWSPQPL------------T
sp|P00757|KLKB4_MOUSE -FSSWIRETMANNP-----------------
sp|Q6H321|KLK2_HORSE -HLKWIKETIEKNS-----------------
sp|Q91VE3|KLK7_MOUSE -YKRWVMETMKTHR-----------------
sp|Q9Y5K2|KLK4_HUMAN -FTEWIEKTVQAS------------------
sp|P29786|TRY3_AEDAE -VRQWIREVSEV-------------------
sp|P35037|TRY3_ANOGA -VRDWVRENSGA-------------------
sp|P07338|CTRB1_RAT -LMPWVQQILEAN------------------
*:
|