t-coffee-examples 11.00.8cbe486-5 / usr / share / doc / t-coffee-examples / prf3.aln

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/usr/share/doc/t-coffee-examples/prf3.aln is in t-coffee-examples 11.00.8cbe486-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below. 

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CLUSTAL FORMAT for T-COFFEE Version_4.32 [http://www.tcoffee.org], CPU=24.75 sec, SCORE=62, Nseq=22, Len=305 

sp|P00746|CFAD_HUMAN   M-HSSVY-FAVLVLLGAAACA-----ARPRGR----------ILGGREAEAHARPYMASV
sp|P51779|CFAD_PIG     MADRSGH-LAALILLGAAVCV-----AQPRGR----------ILGGQEAKSHERPYMASV
sp|P15119|MCPT2_MOUSE  M-------QALLFLMALLLPS-----GAGAEE----------IIGGVEAKPHSRPYMAYL
sp|Q00356|MCPTX_MOUSE  M-------QALLFLMALLLPS-----GAGAEE----------IIGGVESEPHSRPYMAYV
sp|P21844|MCPT5_MOUSE  M------HLLTLHLLLLLLGS-----STKAGE----------IIGGTECIPHSRPYMAYL
sp|P50339|MCPT3_RAT    M------NLHALCLLLLLLGS-----STKAGE----------IIGGTECIPHSRPYMAYL
sp|P50341|MCPT2_MERUN  M------HLLALHLLLFLLGS-----RAKAGE----------IIGGTECKPHSRPYMAYL
sp|P24158|PRTN3_HUMAN  MAHRPPSPALASVLLALLLSG-----AARAAE----------IVGGHEAQPHSRPYMASL
sp|Q9H2R5|KLK15_HUMAN  M-W-----LLLTLSFLLASTA-----AQDGDK----------LLEGDECAPHSQPWQVAL
sp|Q9UKR3|KLK13_HUMAN  M-WPLAL-VIASLTLALSGGV-----SQESSKVLNTNGTSGFLPGGYTCFPHSQPWQAAL
sp|P16049|TRY1_GADMO   M----KS-LIFVLLL--GAVF------AEEDK----------IVGGYECTKHSQAHQVSL
sp|Q91041|TRYX_GADMO   M----KS-LIFVLLL--GAVF------AEEDK----------IVGGYECTRHSQAHQVSL
sp|P35031|TRY1_SALSA   M----IS-LVFVLLI--GAAF-----ATEDDK----------IVGGYECKAYSQTHQVSL
sp|P35032|TRY2_SALSA   ------------------AAF-----ATEDDK----------IVGGYECKAYSQPHQVSL
sp|P35033|TRY3_SALSA   F------------AVAFAAPI-----DDEDDK----------IVGGYECRKNSASYQASL
sp|Q90627|TRY1_CHICK   M----KF-LVLVAFV--GVTVAFPISDEDDDK----------IVGGYSCARSAAPYQVSL
sp|P00761|TRYP_PIG     F----------------------PT-DD-DDK----------IVGGYTCAANSIPYQVSL
sp|P08426|TRY3_RAT     M----KA-LIFLAFL--GAAVALPL-DDDDDK----------IVGGYTCQKNSLPYQVSL
sp|P00762|TRY1_RAT     M----SA-LLILALV--GAAVAFPL-ED-DDK----------IVGGYTCPEHSVPYQVSL
sp|P06872|TRY2_CANFA   M----NP-LLILAFL--GAAVATPT-DD-DDK----------IVGGYTCEENSVPYQVSL
sp|P07477|TRY1_HUMAN   M----NP-LLILTFV--AAALAAPF-DD-DDK----------IVGGYNCEENSVPYQVSL
sp|P70059|TRY2_XENLA   M----KF-LVILVLL--GAAVAF---ED-DDK----------IVGGFTCAKNAVPYQVSL
                                                      .          :  *  .     .  . :

sp|P00746|CFAD_HUMAN   QL----NGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLR
sp|P51779|CFAD_PIG     QV----NGKHVCGGFLVSEQWVLSAAHCLEDVAEGKLQVLLGAHSLSQPEPSKRLYDVLR
sp|P15119|MCPT2_MOUSE  KFTTKNGSKERCGGFLIAPQFVMTAAHCN----GSEISVILGAHNINKNEPTQQIIKTEK
sp|Q00356|MCPTX_MOUSE  NTFRRKGYVAICGGFLITPQFVMTAAHCR----GRRMTVTLGAHNVRKRECTQQKIKVEK
sp|P21844|MCPT5_MOUSE  EIVTSENYLSACSGFLIRRNFVLTAAHCA----GRSITVLLGAHNKTSKEDTWQKLEVEK
sp|P50339|MCPT3_RAT    EIVTSDNYLSACSGFLIRRNFVLTAAHCA----GRSITVLLGAHNKTYKEDTWQKLEVEK
sp|P50341|MCPT2_MERUN  EIATSKNYLSTCSGFLIRRNFVLTAAHCS----GRSITVLLGAHNKTAKEDTWQKIEVEK
sp|P24158|PRTN3_HUMAN  QMRGNPGS-HFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHFSVAQ
sp|Q9H2R5|KLK15_HUMAN  YE----RGRFNCGASLISPHWVLSAAHCQSR----FMRVRLGEHNLRKRDGPEQLRTTSR
sp|Q9UKR3|KLK13_HUMAN  LV----QGRLLCGGVLVHPKWVLTAAHCLKE----GLKVYLGKHALGRVEAGEQVREVVH
sp|P16049|TRY1_GADMO   N-----SGYHFCGGSLVSKDWVVSAAHCYKS----VLRVRLGEHHIRVNEGTEQYISSSS
sp|Q91041|TRYX_GADMO   N-----SGYHFCGGSLVSKDWVVSAAHCYKS----VLRVRLGEHHIRVNEGTEQFISSSS
sp|P35031|TRY1_SALSA   N-----SGYHFCGGSLVNENWVVSAAHCYKS----RVEVRLGEHNIKVTEGSEQFISSSR
sp|P35032|TRY2_SALSA   N-----SGYHFCGGSLVNENWVVSAAHCYQS----RVEVRLGEHNIQVTEGSEQFISSSR
sp|P35033|TRY3_SALSA   Q-----SGYHFCGGSLISSTWVVSAAHCYKS----RIQVRLGEHNIAVNEGTEQFIDSVK
sp|Q90627|TRY1_CHICK   N-----SGYHFCGGSLISSQWVLSAAHCYKS----SIQVKLGEYNLAAQDGSEQTISSSK
sp|P00761|TRYP_PIG     N-----SGSHFCGGSLINSQWVVSAAHCYKS----RIQVRLGEHNIDVLEGNEQFINAAK
sp|P08426|TRY3_RAT     N-----AGYHFCGGSLINSQWVVSAAHCYKS----RIQVRLGEHNIDVVEGGEQFIDAAK
sp|P00762|TRY1_RAT     N-----SGYHFCGGSLINDQWVVSAAHCYKS----RIQVRLGEHNINVLEGDEQFINAAK
sp|P06872|TRY2_CANFA   N-----AGYHFCGGSLISDQWVVSAAHCYKS----RIQVRLGEYNIDVLEGNEQFINSAK
sp|P07477|TRY1_HUMAN   N-----SGYHFCGGSLINEQWVVSAGHCYKS----RIQVRLGEHNIEVLEGNEQFINAAK
sp|P70059|TRY2_XENLA   N-----AGYHFCGGSLINSQWVVSAAHCYKS----RIQVRLGEHNIALNEGTEQFIDSQK
                                  *.. *:   :*::*.**        : * ** :     :   :      

sp|P00746|CFAD_HUMAN   AVPHPDSQPD----TIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGI
sp|P51779|CFAD_PIG     AVPHPDSQPD----TIDHDLLLLKLSEKAELGPAVQPLAWQREDHEVPAGTLCDVAGWGV
sp|P15119|MCPT2_MOUSE  TFVHPKFQYL----SGFYDIMLLKLQKKAELNSDVDVISLPSSSDFIKPGKMCWTAGWGK
sp|Q00356|MCPTX_MOUSE  YILPPNYNVS----SKFNDIVLLKLKKQANLTSAVDVVPLPGPSDFAKPGTMCWAAGWGR
sp|P21844|MCPT5_MOUSE  QFLHPKYDEN----LVVHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPPGRMCRAVGWGR
sp|P50339|MCPT3_RAT    QFIHPNYDKR----LVLHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPPGRMCRAVGWGR
sp|P50341|MCPT2_MERUN  QFPHPKYDDY----SVLHDIMLLKLKEKAKLTLAVGTLPLPAKFSFIPPGRVCRAVGWGK
sp|P24158|PRTN3_HUMAN  VFLN-NYDAE----NKLNDVLLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGR
sp|Q9H2R5|KLK15_HUMAN  VIPHPRYEAR----SHRNDIMLLRLVQPARLNPQVRPAVLPTR--CPHPGEACVVSGWGL
sp|Q9UKR3|KLK13_HUMAN  SIPHPEYRRSPTHLNHDHDIMLLELQSPVQLTGYIQTLPLSHN-NRLTPGTTCRVSGWGT
sp|P16049|TRY1_GADMO   VIRHPNYSSY----NINNDIMLIKLTKPATLNQYVHAVALPTE--CAADATMCTVSGWGN
sp|Q91041|TRYX_GADMO   VIRHPNYSSY----NIDNDIMLIKLTEPATLNQYVHAVALPTE--CAADATMCTVSGWGN
sp|P35031|TRY1_SALSA   VIRHPNYSSY----NIDNDIMLIKLSKPATLNTYVQPVALPTS--CAPAGTMCTVSGWGN
sp|P35032|TRY2_SALSA   VIRHPNYSSY----NIDNDIMLIKLSKPATLNTYVQPVALPTS--CAPAGTMCTVSGWGN
sp|P35033|TRY3_SALSA   VIMHPSYNSR----NLDNDIMLIKLSKPASLNSYVSTVALPSS--CASSGTRCLVSGWGN
sp|Q90627|TRY1_CHICK   VIRHSGYNAN----TLNNDIMLIKLSKAATLNSYVNTVPLPTS--CVTAGTTCLISGWGN
sp|P00761|TRYP_PIG     IITHPNFNGN----TLDNDIMLIKLSSPATLNSRVATVSLPRS--CAAAGTECLISGWGN
sp|P08426|TRY3_RAT     IIRHPSYNAN----TFDNDIMLIKLNSPATLNSRVSTVSLPRS--CGSSGTKCLVSGWGN
sp|P00762|TRY1_RAT     IIKHPNYSSW----TLNNDIMLIKLSSPVKLNARVAPVALPSA--CAPAGTQCLISGWGN
sp|P06872|TRY2_CANFA   VIRHPNYNSW----ILDNDIMLIKLSSPAVLNARVATISLPRA--CAAPGTQCLISGWGN
sp|P07477|TRY1_HUMAN   IIRHPQYDRK----TLNNDIMLIKLSSRAVINARVSTISLPTA--PPATGTKCLISGWGN
sp|P70059|TRY2_XENLA   VIKHPNYNSR----NLDNDIMLIKLSTTARLSANIQSVPLPSA--CASAGTNCLISGWGN
                        .                *::*:.*   . :   :              .  *   *** 

sp|P00746|CFAD_HUMAN   VNHAGR-----------RPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRD
sp|P51779|CFAD_PIG     VSHTGR-----------RPDRLQHLLLPVLDRTTCNLRTYHDGTITERMMCAE--SNRRD
sp|P15119|MCPT2_MOUSE  TGKNNP-----------LSVTLREVELRIMDQEACKDHSDY---DYQLQVCAGSPTTSKS
sp|Q00356|MCPTX_MOUSE  TGVKKI-----------ISHTLREVELKIVGEKACKIFRHY---KDSLQICVGSSTKVAS
sp|P21844|MCPT5_MOUSE  TNVNEP-----------ASDTLQEVKMRLQEPQACKHFTSF---RHNSQLCVGNPKKMQN
sp|P50339|MCPT3_RAT    TNVNEP-----------ASDTLQEVKMRLQEPQSCKHFTSF---QHKSQLCVGNPKKMQN
sp|P50341|MCPT2_MERUN  TNVNEP-----------TSDTLQEVKMRLLEAEGCKHFTNF---YHSSQLCVGNPKKMQN
sp|P24158|PRTN3_HUMAN  VGAHDP-----------PAQVLQELNVTVVTF-FC----------RPHNICTFVPRRKAG
sp|Q9H2R5|KLK15_HUMAN  VSHNEPGTAGSPRSQVSLPDTLHCANISIISDTSCDK--SYPGRLTNTMVCAGAEGRGAE
sp|Q9UKR3|KLK13_HUMAN  TTS----------PQVNYPKTLQCANIQLRSDEECRQ--VYPGKITDNMLCAGTKEGGKD
sp|P16049|TRY1_GADMO   TMSSVA-----------DGDKLQCLSLPILSHADCAN--SYPGMITQSMFCAGYLEGGKD
sp|Q91041|TRYX_GADMO   TMSSVD-----------DGDKLQCLNLPILSHADCAN--SYPGMITQSMFCAGYLEGGKD
sp|P35031|TRY1_SALSA   TMSSTA-----------DSNKLQCLNIPILSYSDCNN--SYPGMITNAMFCAGYLEGGKD
sp|P35032|TRY2_SALSA   TMSSTA-----------DKNKLQCLNIPILSYSDCNN--SYPGMITNAMFCAGYLEGGKD
sp|P35033|TRY3_SALSA   LSG----------SSSNYPDTLRCLDLPILSSSSCNS--AYPGQITSNMFCAGFMEGGKD
sp|Q90627|TRY1_CHICK   TLS----------SGSLYPDVLQCLNAPVLSSSQCSS--AYPGRITSNMICIGYLNGGKD
sp|P00761|TRYP_PIG     TKS----------SGSSYPSLLQCLKAPVLSDSSCKS--SYPGQITGNMICVGFLEGGKD
sp|P08426|TRY3_RAT     TLS----------SGTNYPSLLQCLDAPVLSDSSCKS--SYPGKITSNMFCLGFLEGGKD
sp|P00762|TRY1_RAT     TLS----------NGVNNPDLLQCVDAPVLSQADCEA--AYPGEITSSMICVGFLEGGKD
sp|P06872|TRY2_CANFA   TLS----------SGTNYPELLQCLDAPILTQAQCEA--SYPGQITENMICAGFLEGGKD
sp|P07477|TRY1_HUMAN   TAS----------SGADYPDELQCLDAPVLSQAKCEA--SYPGKITSNMFCVGFLEGGKD
sp|P70059|TRY2_XENLA   TLS----------SGTNYPDLLQCLNAPILTDSQCSN--SYPGEITKNMFCAGFLAGGKD
                                            *:     :     *              .*         

sp|P00746|CFAD_HUMAN   SCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA---------
sp|P51779|CFAD_PIG     SCKGDSGGPLVCGGVAEGVVTSGSRVCGNRKKPGIYTRLASYVAWIDGVMADSAAA----
sp|P15119|MCPT2_MOUSE  IGQGDSGGPLVCDSVAHGIASSY-----EAKAPAVFTRISYYLPWIYKVLKSK-------
sp|Q00356|MCPTX_MOUSE  VYMGDSGGPLLCAGVAHGIVSSGR---GNAKPPAIFTRISPHVPWINRVIKGK-------
sp|P21844|MCPT5_MOUSE  VYKGDSGGPLLCAGIAQGIASYVH---RNAKPPAVFTRISHYRPWINKILREN-------
sp|P50339|MCPT3_RAT    VYKGDSGGPLLCAGIAQGIASYVH---PNAKPPAVFTRISHYRPWINKILREN-------
sp|P50341|MCPT2_MERUN  VYKGDSGGPLLCAGIAQGIASYVR---RNARPPAVFTRISHYRPWINKILREN-------
sp|P24158|PRTN3_HUMAN  ICFGDSGGPLICDGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLRRVEAKGR--
sp|Q9H2R5|KLK15_HUMAN  SCEGDSGGPLVCGGILQGIVSWGDVPCDNTTKPGVYTKVCHYLEWIRETMKR--------
sp|Q9UKR3|KLK13_HUMAN  SCEGDSGGPLVCNRTLYGIVSWGDFPCGQPDRPGVYTRVSRYVLWIRETIRKYETQQQKW
sp|P16049|TRY1_GADMO   SCQGDSGGPVVCNGVLQGVVSWG-YGCAERDHPGVYAKVCVLSGWVRDTMANY-------
sp|Q91041|TRYX_GADMO   SCQGDSGGPVVCNGVLQGVVSWG-YGCAERDNPGVYAKVCVLSGWVRDTMASY-------
sp|P35031|TRY1_SALSA   SCQGDSGGPVVCNGELQGVVSWG-YGCAEPGNPGVYAKVCIFNDWLTSTMASY-------
sp|P35032|TRY2_SALSA   SCQGDSGGPVVCNGELQGVVSWG-YGCAEPGNPGVYAKVCIFNDWLTSTMATY-------
sp|P35033|TRY3_SALSA   SCQGDSGGPVVCNGQLQGVVSWG-YGCAQRNKPGVYTKVCNYRSWISSTMSSN-------
sp|Q90627|TRY1_CHICK   SCQGDSGGPVVCNGQLQGIVSWG-IGCAQKGYPGVYTKVCNYVSWIKTTMSSN-------
sp|P00761|TRYP_PIG     SCQGDSGGPVVCNGQLQGIVSWG-YGCAQKNKPGVYTKVCNYVNWIQQTIAAN-------
sp|P08426|TRY3_RAT     SCQGDSGGPVVCNGQLQGVVSWG-YGCAQKGKPGVYTKVCNYVNWIQQTVAAN-------
sp|P00762|TRY1_RAT     SCQGDSGGPVVCNGQLQGIVSWG-YGCALPDNPGVYTKVCNFVGWIQDTIAAN-------
sp|P06872|TRY2_CANFA   SCQGDSGGPVVCNGELQGIVSWG-YGCAQKNKPGVYTKVCNFVDWIQSTIAANS------
sp|P07477|TRY1_HUMAN   SCQGDSGGPVVCNGQLQGVVSWG-DGCAQKNKPGVYTKVYNYVKWIKNTIAANS------
sp|P70059|TRY2_XENLA   SCQGDSGGPVVCNGQLQGVVSWG-YGCAQRNYPGVYTKVCNFVTWIQSTISSN-------
                          ******::*     *: :           * .::::     *:   :          

sp|P00746|CFAD_HUMAN   -----
sp|P51779|CFAD_PIG     -----
sp|P15119|MCPT2_MOUSE  -----
sp|Q00356|MCPTX_MOUSE  -----
sp|P21844|MCPT5_MOUSE  -----
sp|P50339|MCPT3_RAT    -----
sp|P50341|MCPT2_MERUN  -----
sp|P24158|PRTN3_HUMAN  ----P
sp|Q9H2R5|KLK15_HUMAN  ----N
sp|Q9UKR3|KLK13_HUMAN  LKGPQ
sp|P16049|TRY1_GADMO   -----
sp|Q91041|TRYX_GADMO   -----
sp|P35031|TRY1_SALSA   -----
sp|P35032|TRY2_SALSA   -----
sp|P35033|TRY3_SALSA   -----
sp|Q90627|TRY1_CHICK   -----
sp|P00761|TRYP_PIG     -----
sp|P08426|TRY3_RAT     -----
sp|P00762|TRY1_RAT     -----
sp|P06872|TRY2_CANFA   -----
sp|P07477|TRY1_HUMAN   -----
sp|P70059|TRY2_XENLA   -----

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