/usr/share/doc/t-coffee-examples/profile2_pdb2.fasta is in t-coffee-examples 11.00.8cbe486-5.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 | >sp|Q91VE3|KLK7_MOUSE Kallikrein-7 precursor (EC 3.4.21.-) (Stratum corneum chymotryptic enzyme) (Thymopsin) - Mus musculus (Mouse).
MGVWLLSLITVLLSLALETAGQGERIIDGYKCKEGSHPWQVALLKGNQLH
CGGVLVDKYWVLTAAHCKMGQYQVQLGSDKIGDQSAQKIKATKSFRHPGY
STKTHVNDIMLVRLDEPVKMSSKVEAVQLPEHCEPPGTSCTVSGWGTTTS
PDVTFPSDLMCSDVKLISSRECKKVYKDLLGKTMLCAGIPDSKTNTCNGD
SGGPLVCNDTLQGLVSWGTYPCGQPNDPGVYTQVCKYKRWVMETMKTHR
>sp|Q6H321|KLK2_HORSE Kallikrein-1E2 precursor (EC 3.4.21.35) (Glandular kallikrein) (HPK) - Equus caballus (Horse).
MWFLVLCLDLSLGETGALPPIQSRIIGGWECEKHSKPWQVAVYHQGHFQC
GGVLVHPQWVLTAAHCMSDDYQIWLGRHNLSEDEDTAQFHQVSDSFLDPQ
FDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGS
TCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEKMTEFVLCAT
HRDDSGSICLGDSGGALICDGVFQGITSWGYSECADFNDNFVFTKVMPHL
KWIKETIEKNS
>sp|Q03238|GRAM_RAT Granzyme M precursor (EC 3.4.21.-) (Met-ase) (Natural killer cell granular protease) (RNK-Met-1) (Fragment) - Rattus norvegicus (Rat).
LLLLLALKTLWAVGNRFEAQIIGGREAVPHSRPYMVSLQNTKSHMCGGVL
VHQKWVLTAAHCLSEPLQQLKLVFGLHSLHDPQDPGLTFYIKQAIKHPGY
NLKYENDLALLKLDGRVKPSKNVKPLALPRKPRDKPAEGSRCSTAGWGIT
HQRGQLAKSLQELDLRLLDTRMCNNSRFWNGVLTDSMLCLKAGAKGQAPC
KGDSGGPLVCGKGKVDGILSFSSKNCTDIFKPTVATAVAPYSSWIRKVIG
RWSPQPLT
>sp|P20160|CAP7_HUMAN Azurocidin precursor (Cationic antimicrobial protein CAP37) (Heparin- binding protein) (HBP) - Homo sapiens (Human).
MTRLTVLALLAGLLASSRAGSSPLLDIVGGRKARPRQFPFLASIQNQGRH
FCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSIS
SMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQ
VAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNVCTGVLTRRGGICNGD
GGTPLVCEGLAHGVASFSLGPCGRGPDFFTRVALFRDWIDGVLNNPGPGP
A
>sp|P07338|CTRB1_RAT Chymotrypsinogen B precursor (EC 3.4.21.1) [Contains: Chymotrypsin B chain A; Chymotrypsin B chain B; Chymotrypsin B chain C] - Rattus norvegicus (Rat).
MAFLWLVSCFALVGATFGCGVPTIQPVLTGLSRIVNGEDAIPGSWPWQVS
LQDKTGFHFCGGSLISEDWVVTAAHCGVKTSDVVVAGEFDQGSDEENIQV
LKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLPNVDDDFPP
GTVCATTGWGKTKYNALKTPEKLQQAALPIVSEADCKKSWGSKITDVMTC
AGASGVSSCMGDSGGPLVCQKDGVWTLAGIVSWGSGVCSTSTPAVYSRVT
ALMPWVQQILEAN
>sp|P00757|KLKB4_MOUSE Kallikrein 1-related peptidase-like b4 precursor (7S nerve growth factor alpha chain) (Alpha-NGF) - Mus musculus (Mouse).
MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLL
DRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSL
LNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLAS
GWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGG
SYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRE
TMANNP
>sp|P80015|CAP7_PIG Azurocidin (Cationic antimicrobial protein CAP37) (Heparin-binding protein) (HBP) - Sus scrofa (Pig).
IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGS
ASVVLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQLDREARL
TPSVALVPLPPQNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSN
PCLPRDMCIGVFSRRGRISQGDRGTPLVCNGLAQGVASFLRRRFRRSSGF
FTRVALFRNWIDSVLNNPP
>sp|P29786|TRY3_AEDAE Trypsin 3A1 precursor (EC 3.4.21.4) - Aedes aegypti (Yellowfever mosquito).
MNQFLFVSFCALLDSAKVSAATLSSGRIVGGFQIDIAEVPHQVSLQRSGR
HFCGGSIISPRWVLTRAHCTTNTDPAAYTIRAGSTDRTNGGIIVKVKSVI
PHPQYNGDTYNYDFSLLELDESIGFSRSIEAIALPDASETVADGAMCTVS
GWGDTKNVFEMNTLLRAVNVPSYNQAECAAALVNVVPVTEQMICAGYAAG
GKDSCQGDSGGPLVSGDKLVGVVSWGKGCALPNLPGVYARVSTVRQWIRE
VSEV
>sp|P35037|TRY3_ANOGA Trypsin-3 precursor (EC 3.4.21.4) - Anopheles gambiae (African malaria mosquito).
MISNKIAILLAVLVVAVACAQARVAQQHRSVQALPRFLPRPKYDVGHRIV
GGFEIDVSETPYQVSLQYFNSHRCGGSVLNSKWILTAAHCTVNLQPSSLA
VRLGSSRHASGGTVVRVARVLEHPNYDDSTIDYDFSLMELESELTFSDVV
QPVSLPDQDEAVEDGTMTIVSGWGNTQSAAESNAILRAANVPTVNQKECT
IAYSSSGGITDRMLCAGYKRGGKDACQGDSGGPLVVDGKLVGVVSWGFGC
AMPGYPGVYARVAVVRDWVRENSGA
>sp|P00773|ELA1_RAT Elastase-1 precursor (EC 3.4.21.36) - Rattus norvegicus (Rat).
MLRFLVFASLVLYGHSTQDFPETNARVVGGAEARRNSWPSQISLQYLSGG
SWYHTCGGTLIRRNWVMTAAHCVSSQMTFRVVVGDHNLSQNDGTEQYVSV
QKIMVHPTWNSNNVAAGYDIALLRLAQSVTLNNYVQLAVLPQEGTILANN
NPCYITGWGRTRTNGQLSQTLQQAYLPSVDYSICSSSSYWGSTVKTTMVC
AGGDGVRSGCQGDSGGPLHCLVNGQYSVHGVTSFVSSMGCNVSKKPTVFT
RVSAYISWMNNVIAYT
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