/usr/share/xcrysden/Tcl/xcInit.tcl is in xcrysden-data 1.5.60-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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# Author: #
# ------ #
# Anton Kokalj Email: Tone.Kokalj@ijs.si #
# Department of Physical and Organic Chemistry Phone: x 386 1 477 3523 #
# Jozef Stefan Institute Fax: x 386 1 477 3811 #
# Jamova 39, SI-1000 Ljubljana #
# SLOVENIA #
# #
# Source: $XCRYSDEN_TOPDIR/Tcl/xcInit.tcl
# ------ #
# Copyright (c) 1996-2003 by Anton Kokalj #
#############################################################################
###############################################################################
# xcrysden TEMPORARY FILES:
#
# xc_gengeom.$$ --- produced with gengeom with M1_INFO
# xc_struc.$$ --- produced with gengeom with .not. M1_INFO -> used by xcrys
# xc_str2xcr.$$ --- produced by str2xcr program (converted WIEN2k struct file
# to "xsf" format)
# xc_wnstr.struct--- temporary WIEN2k struct file
# xc_wienstruct.$$-- wien struct file (copy of original WIEN2k struct file)
# xc_inp.$$ --- crystal95's input (also xc_tmp.$$)
# xc_output.$$ --- crystal95's output
# xc_tmp.$$ --- something insignificant
# xc_bin.$$ --- binary file produced by "xcrys" interpreter; used
# for isosurface evaluation
# xc_binVrt.$$ --- binary file produced by "xcrys" interpreter; used
# to stote the current gridvertices
# xc_datagrid.$$ --- binary file where datagrid from DATAGRIDXD is stored
# xc_ndsfp.$$ --- Wigner-Seitz nodes:: nodes for primitive cell mode
# xc_ndsfc.$$ --- Wigner-Seitz nodes:: nodes for conventional cell mode
# xc_klist.$$ --- k-list-file for the kPath program
# xc_rho.$$ --- rho-3Ddatagrid file for WIEN
# here are variables that need to be initialised more than once
proc InitGlobalVar {} {
global species nxdir nydir nzdir \
periodic \
inp n_groupsel groupsel AdvGeom \
prop \
XCState \
dispmode mode2D \
geng \
ws \
colSh \
sInfo \
system \
isoControl \
openGL \
undoMenu undoAdvGeom \
pDen \
colSh \
xsfAnim gifAnim \
light \
glLight \
atomLabel \
toglEPS
#
# array xcMisc will be used for various things; it is to prevent to many
# global variables
#
# xcMisc(titlefile) ... name of the file that appears on the main window
# title
set species {}
set nxdir 1
set nydir 1
set nzdir 1
# PERIODIC global variable -> data about dimensionality goes here
# periodic(dim) ... what is the dimensionality of the system
set periodic(dim) 0
set periodic(igroup) 1; #igroup according to gengeom program
set dispmode(style) 3D
set mode2D(WF) Off
set mode2D(PL) Off
set mode2D(PB) Off
set mode2D(BS1) Off
set mode2D(BS2) Off
set mode2D(SF) Off
set arraylist [list inp AdvGeom XCState prop]
set varlist [list n_groupsel groupsel]
foreach array $arraylist {
if [array exists $array] { unset $array }
}
foreach var $varlist {
if [info exists $var] { unset $var }
}
#default #3 gengeom's argument is 1
if { ! [info exists system(c95_version)] } { set system(c95_version) none }
set geng(M3_ARGUMENT) [GetGengM3Arg ANGS $system(c95_version)]
# what to do with IsoXXXX ???
# close all other toplevels ???
# WIGNER-SEITZ CELL
set ws(not_config_yet) 1
# initialization of mody array
ModConst
# this is associated with XCRYSDEN INFO RECORD (core xcrys interpreter)
if { [info exists sInfo] } { unset sInfo }
if ![info exists colSh] {
set colSh(scheme) atomic
set colSh(slab_fractional) 1
set colSh(slab_dir) "-z"
set colSh(slab_colbas) monochrome
set colSh(slab_coltyp) combined
set colSh(slab_alpha) 0.65
set colSh(dist_x) 0.0
set colSh(dist_y) 0.0
set colSh(dist_z) 0.0
set colSh(dist_r) 1.0
set colSh(dist_colbas) monochrome
set colSh(dist_coltyp) combined
set colSh(dist_alpha) 0.65
}
# this should be the same as ISOLINE_MAXLEVEL in isosurf.h file
set isoControl(max_allowed_2Dnisoline) 100
################################
# initialization of openGL array
################################
set openGL(src_blend_list) {
GL_ZERO
GL_ONE
GL_DST_COLOR
GL_ONE_MINUS_DST_COLOR
GL_SRC_ALPHA
GL_ONE_MINUS_SRC_ALPHA
GL_DST_ALPHA
GL_ONE_MINUS_DST_ALPHA
GL_SRC_ALPHA_SATURATE
}
set openGL(dst_blend_list) {
GL_ZERO
GL_ONE
GL_SRC_COLOR
GL_ONE_MINUS_SRC_COLOR
GL_SRC_ALPHA
GL_ONE_MINUS_SRC_ALPHA
GL_DST_ALPHA
GL_ONE_MINUS_DST_ALPHA
}
xc_setGLparam frontface -what isosurf_one -frontface CCW
xc_setGLparam frontface -what isosurf_pos -frontface CCW
xc_setGLparam frontface -what isosurf_neg -frontface CCW
set pos [xc_getGLparam frontface -what isosurf_pos]
set neg [xc_getGLparam frontface -what isosurf_neg]
#xcDebug -debug "Pos: $pos"
#xcDebug -debug "Neg: $neg"
set openGL(isoside_pos) [lindex $pos 0]
set openGL(isoside_neg) [lindex $neg 0]
set openGL(front_ambient_R) 0
set openGL(front_ambient_G) 0
set openGL(front_ambient_B) 0
set openGL(front_diffuse_R) 0
set openGL(front_diffuse_G) 0
set openGL(front_diffuse_B) 0
set openGL(front_specular_R) 0
set openGL(front_specular_G) 0
set openGL(front_specular_B) 0
set openGL(front_emission_R) 0
set openGL(front_emission_G) 0
set openGL(front_emission_B) 0
####
set openGL(back_ambient_R) 0
set openGL(back_ambient_G) 0
set openGL(back_ambient_B) 0
set openGL(back_diffuse_R) 0
set openGL(back_diffuse_G) 0
set openGL(back_diffuse_B) 0
set openGL(back_specular_R) 0
set openGL(back_specular_G) 0
set openGL(back_specular_B) 0
set openGL(back_emission_R) 0
set openGL(back_emission_G) 0
set openGL(back_emission_B) 0
set undoMenu(active_fg) #ffffff
set undoMenu(active_bg) #0000ff
set undoMenu(default_fg) #000000
set undoMenu(default_bg) #ffffff
set undoAdvGeom(start_index) 0
set undoAdvGeom(current_index) 0
set undoAdvGeom(list) {}
set undoAdvGeom(redo_start_index) 0
set undoAdvGeom(redo_current_index) 0
set undoAdvGeom(redo_list) {}
if [info exists pDen(nsurface)] { unset pDen(nsurface) }
set pDen(type) gauss
set pDen(radius) cov
set pDen(level) 1.0
set pDen(cutoff) 1.0
set pDen(colorscheme) atomic
set pDen(drawstyle) wire
set pDen(surfacetype) molsurf
set pDen(resolution) 0.35
set pDen(smoothsteps) 0
set pDen(smoothweight) 0.2
set pDen(transparent) 0
set pDen(shademodel) smooth
set pDen(monocolor) {0.8 0.8 0.2}
set pDen(tessellation) cube
set pDen(normals) gradient
set pDen(t_type) GAUSSIAN
set pDen(t_radius) {Covalent radii}
set pDen(t_colorscheme) {Atomic colors}
set pDen(t_drawstyle) Wire
set pDen(t_surfacetype) {Pseudo density}
set pDen(t_shademodel) Smooth
set pDen(t_tessellation) Cube
set pDen(t_normals) Gradient
set colSh(slabrange_min) 0.00
set colSh(slabrange_max) 1.00
set xsfAnim(not_anim) 0
set gifAnim(create) 0
set gifAnim(gif_transp) 0
set gifAnim(gif_minimize) 0
set gifAnim(gif_global_colormap) 0
set gifAnim(edit_param) 1
set gifAnim(movie_format) mpeg
set gifAnim(temp_files_dir) tmp
set gifAnim(frame_files_format) PPM
set gifAnim(ntime_first_frame) 1
set gifAnim(ntime_last_frame) 1
set gifAnim(delay) 10
set gifAnim(loop) 0
set gifAnim(make_gifAnim) 0
set atomLabel(fontBrowser) "Simple Font Browser"
set atomLabel(globalFont) ""
set atomLabel(globalFont.brightColor) {1.0 1.0 1.0}
set atomLabel(globalFont.darkColor) {0.0 0.0 0.0}
set atomLabel(globalFont.do_display) 1
set atomLabel(atomFont) ""
set atomLabel(atomFont.id) ""
set atomLabel(atomFont.label) ""
set atomLabel(atomFont.brightColor) {1.0 1.0 1.0}
set atomLabel(atomFont.darkColor) {0.0 0.0 0.0}
set atomLabel(atomFont.do_display) 1
set light On
#if { ! [info exists glLight(nlights)] } {
# set glLight(nlights) 6
#}
set toglEPS(DRAW_BACKGROUND) 0
set toglEPS(SIMPLE_LINE_OFFSET) 0
set toglEPS(SILENT) 0
set toglEPS(BEST_ROOT) 1
set toglEPS(OCCLUSION_CULL) 1
set toglEPS(NO_TEXT) 0
set toglEPS(LANDSCAPE) 0
set toglEPS(NO_PS3_SHADING) 0
set toglEPS(NO_PIXMAP) 0
set toglEPS(NO_BLENDING) 0
}
proc xcInit {} {
#global system Const geng
# take care of the scratch directory
if { ![file isdirectory $system(SCRDIR)] } {
puts stderr "ERROR: SCRATCH directory \"$system(SCRDIR)\" does not exist"
exit 0
}
set system(USER_DIR) $system(TOPDIR)
######################################################################
# initialize XCRYSDEN'S LIBRARY: variables needed for keeping xcrysden
# alive will be loaded here
set xcMisc(status_init_label) "Initializing library ..."
source $system(TOPDIR)/Tcl/xcInitLib.tcl
##########################################################
# now read the user-custom file; USER MAY CHANGE SOMETHING
# if ![user-custom-file present]
if { [file exists $env(HOME)/.xcrysden/custom-definitions] } {
source $env(HOME)/.xcrysden/custom-definitions
} else {
source $system(TOPDIR)/Tcl/custom-definitions
}
# backward compatibility; now in custom-definitions we use
# xcMisc(printCommand) for consistency
if { [info exists xcMisc(printCommand)] } {
set printCanvas(printCommand) $xcMisc(printCommand)
}
#if $xcMisc(debug) {
# #debug
# #lappend auto_path $xcMisc(dev_dir)
#}
# ------------------------------------------------------------------------
# GOTO $system(SCRDIR)
cd $system(SCRDIR)
# ------------------------------------------------------------------------
# make the 444 core file on $system(SCRDIR)
catch {exec touch core}
catch {exec chmod 444 core}
###########################
# make some subdirectories; so far we need just 1
if { [file isdirectory $system(SCRDIR)/dir1] } {
file delete -force $system(SCRDIR)/dir1
}
file mkdir $system(SCRDIR)/dir1
set system(SCRDIR_1) $system(SCRDIR)/dir1
set xcMisc(status_init_label) "Checking packages ..."
#######################################################################
# check software packages
check_package_awk
check_package_terminal
check_package_crystal
find_package_imagemagick
find_package_gifsicle
find_package_whirlgif
find_package_mencoder
find_package_ppmtompeg
find_package_babel
find_package_xwd
determine_movie_encoders
#######################################################################
###################
# FORTRAN UNIT NAME
set system(ftn_name) [FtnName]
#################################################
# IMPORTANT CONSTANTS
# -----------------------------------------------
set Const(bohr) 0.529177; # conversion factor for Ang/Bohr in c95
##################################################
# INITIALIZATION OF GLOBAL VARIABLES
# ------------------------------------------------
set xcMisc(status_init_label) "Creating initializing variables ..."
InitGlobalVar
##################################################
# load atom names
AtomNames
###################################################
# THIS IS FOR GENGEOM PROGRAM
# usage of "gengeom" program:
#
# gengeom MODE1 MODE2 MODE3 IGRP NXDIR NYDIR NZDIR OUTPUT INPUT
# 0 1 2 3 4 5 6 7 8 9
#
set geng(M1_INFO) 0; #INFO mode
set geng(M1_PRIM) 1; #PRIMITIV CELL; in case of H/R PARAPIPEDAL SHAPE
set geng(M1_CONV) 2; #CONVENTIONAL CELL; in case of H/R it is PARAP. SHAPE
set geng(M1_HEXA_SHAPE) 3; #THREEPLE CELL for H/R; HEXAGONAL SHAPE
set geng(M1_PRIM3) 4; #PRIMITIV cell for H/R; HEXAGONAL SHAPE
set geng(M2_CELL) 1; #CELL is unit of repetition
set geng(M2_TR_ASYM_UNIT) 2; #translation asymetric unit is unit of repetition
#default gengeom's #3 argument
set geng(M3_ARGUMENT) [GetGengM3Arg ANGS $system(c95_version)]
set geng(IGRP_HEXA) 8; # hexagonal groups
set geng(IGRP_TRIG) 9; # trigonal groups
wm iconbitmap . @$system(BMPDIR)/xcrysden.xbm
#wm iconmask . @$system(BMPDIR)/xcrysden_mask.xbm
set xcMisc(status_init_label) "Building GUI ..."
}
###################################################################
### MAIN --- MAIN --- MAIN --- MAIN --- MAIN --- MAIN --- MAIN ###
###################################################################
package provide Tk ; #puts stderr tk_version=$tk_version
# ------------------------------------------------------------------------
# First process the "argc/argv". The order of arguments is
# XCRYSDEN_TOPDIR XCRYSDEN_SCRATCH and the user specified command line
# options
# ------------------------------------------------------------------------
set system(TOPDIR) [lindex $argv 0]
set system(SCRDIR) [lindex $argv 1]
# ------------------------------------------------------------------------
# Load xcrys.dll
# ------------------------------------------------------------------------
if { [file exists $system(TOPDIR)/bin/xcrys.dll] } {
load $system(TOPDIR)/bin/xcrys.dll
} elseif { [info exists env(XCRYSDEN_LIB_BINDIR)] && [file exists $env(XCRYSDEN_LIB_BINDIR)/xcrys.dll] } {
load $env(XCRYSDEN_LIB_BINDIR)/xcrys.dll
}
# ------------------------------------------------------------------------
# some dirty fixes needed to get the program work under CYGWIN
# ------------------------------------------------------------------------
source $system(TOPDIR)/Tcl/cygwin.tcl
# ------------------------------------------------------------------------
# Load Bwidgets package
# ------------------------------------------------------------------------
set bwidget [glob -nocomplain $system(TOPDIR)/external/lib/bwidget-*]
if { $bwidget != "" } {
set BWidget_dir $bwidget
lappend auto_path $BWidget_dir
}
package require BWidget
# ------------------------------------------------------------------------
# take care of trace/fulltrace utility
# ------------------------------------------------------------------------
if { [info exists env(XCRYSDEN_TRACE)] || [info exists env(XCRYSDEN_FULLTRACE)] } {
# BWidget needs some special treatment if XCTR is enabled
foreach file [glob $BWidget_dir/*.tcl] {
if { $file != "$BWidget_dir/pkgIndex.tcl" && [file exists $file] } {
source $file
}
}
# take care of XCTR
set xctr(recording) 0
source [file join $system(TOPDIR) Tcl xctr.tcl]
}
#source $system(TOPDIR)/Tcl/parseComLinArg.tcl
# ------------------------------------------------------------------------
# Palette
# ------------------------------------------------------------------------
# this was the 0.3 palette:
#tk_setPalette "#ddd"
#tk_setPalette "#b5b193"
#tk_setPalette "#ee9"
#tk_setPalette "#bbb"
# ------------------------------------------------------------------------
# check for stale files in $env(XCRYSDEN_SCRATCH)
# ------------------------------------------------------------------------
proc clean_xcrysden_scratch {} {
global env
set time [clock seconds]
set five_days [expr 5*24*3600]
foreach item [glob -nocomplain -directory $env(XCRYSDEN_SCRATCH) xc_*] {
set item_time [file atime $item]
if { [expr {$time - $item_time}] > $five_days } {
lappend stale_item $item
}
}
if { [info exists stale_item] > 0 } {
set respond [tk_messageBox -parent . -type yesno -default yes -icon question \
-title "Cleaning XCRYSDEN_SCRATCH ?" \
-message "Possible stale files older then 10 days exist in XCRYSDEN_SCRATCH directory.\n\nDo you want to delete them?"]
if { $respond == "yes" } {
puts stderr "*** cleaning XCRYSDEN_SCRATCH directory: $stale_item"
catch { eval file delete -force $stale_item }
}
}
}
clean_xcrysden_scratch
# ------------------------------------------------------------------------
# Welcome images
# ------------------------------------------------------------------------
image create photo kpath -format gif \
-file $system(TOPDIR)/images/xcrysden_kpath.gif
image create photo welcome -format gif \
-file $system(TOPDIR)/images/xcrysden-welcome.gif -width 480 -height 320
# ------------------------------------------------------------------------
# make a WELCOME window
# ------------------------------------------------------------------------
proc centerWelcome {thisWin} {
set w 500
set h 350
# root window height/width
set rh [winfo screenheight $thisWin]
set rw [winfo screenwidth $thisWin]
set reqX [expr {($rw-$w)/2}]
set reqY [expr {($rh-$h)/2}]
wm geometry $thisWin +${reqX}+${reqY}
}
puts stderr "Running on platform : $xcrys(platform)"
puts stderr " Operating system : $tcl_platform(os)"
if { "[lindex $argv 2]" != "--quiet" } {
# MACOSX has problems with wm iconify/wm deiconify requests, so
# don't use them
if { $tcl_platform(os) != "Darwin" } {
#catch {wm iconify .}
catch {wm withdraw .}
toplevel .title
frame .title.f -relief flat -bd 0 -bg #fff
label .title.f.l -image welcome -anchor center -relief flat -bd 0
set xcMisc(status_init_label) "Initializing ..."
label .title.f.l2 -textvariable xcMisc(status_init_label) \
-relief flat -bd 0
pack .title.f
pack .title.f.l .title.f.l2 -side top -fill both -padx 0m -pady 0m
centerWelcome .title
wm overrideredirect .title true
update
}
}
# ------------------------------------------------------------------------
# load necessary initialization
# ------------------------------------------------------------------------
eval [info body xcInit]
# ------------------------------------------------------------------------
# start recording the tracing
# ------------------------------------------------------------------------
set xctr(recording) 1
# ------------------------------------------------------------------------
# do renaming such that exit is associated with clean_exit that cleans the TMPDIR
# ------------------------------------------------------------------------
rename exit exit_tcl
rename clean_exit exit
# provide a custom "cd" when in debug mode to trace changing directories
if { [info exists env(XCRYSDEN_DEBUG)] } {
rename cd cd_tcl
proc cd_debug {dir} {
puts stderr "*** "
puts stderr "*** cd into $dir"
puts stderr "*** "
cd_tcl $dir
}
rename cd_debug cd
}
# ------------------------------------------------------------------------
# parse command-line options or simple start the Viewer
# ------------------------------------------------------------------------
if { [llength $argv] > 2 } {
parseComLinArg [lrange $argv 2 end]
} else {
ViewMol .
}
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