/usr/share/doc/abyss/copyright

Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: ABySS
Upstream-Contact: Shaun Jackman <sjackman@gmail.com>
Source: https://github.com/bcgsc/abyss

Files: *
Copyright: Copyright 2014 Canada's Michael Smith Genome Sciences Centre
License: GPL-3+

Files: Common/* DataLayer/* DistanceEst/* FMIndex/* Map/* ParseAligns/*
Copyright: Copyright 2014 Canada's Michael Smith Genome Sciences Centre
License: GPL-3+

Files: Common/cholesky.hpp
Copyright: Copyright 2005 Gunter Winkler, Konstantin Kutzkow
License: LGPL-2.1+

Files: Common/city.cc Common/city.h
Copyright: Copyright 2011 Google, Inc.
License: Expat

Files: Layout/*
Copyright: Copyright 2012 Shaun Jackman
License: GPL-3+

Files: dialign/*
Copyright: Copyright 2008 Amarendran R. Subramanian
License: LGPL-2.1+

Files: lib/gtest-*
Copyright: 2008 Google Inc.
License: BSD-3-clause

License: LGPL-2.1+
On Debian systems, see `/usr/share/common-licenses/LGPL-2.1'.
.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
.
Amarendran R. Subramanian, hereby disclaims all copyright interest in the
DIALIGN-TX (a multiple sequence alignment algorithm) written by Amarendran R. Subramanian.
.
Amarendran R. Subramanian, 2004-2008
.
DIALIGN-TX has been co-authored by Volker Menrad and Dorothea Emig.
.
Research work using DIALIGN-TX should cite:
.
DIALIGN-TX: improvement of the segment-based approach for multiple
sequence alignment by combining greedy and progressive alignment
strategies
Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern,
Algorithms for Molecular Biology 3:6, 2008
.
DIALIGN-T: An improved algorithm for segment-based multiple
sequence alignment
Amarendran R. Subramanian, Jan Weyer-Menkhoff, Michael Kaufmann,
Burkhard Morgenstern, BMC Bioinformatics 6:66, 2005

Files: FMIndex/bit_array.h
Copyright: Copyright 2010 Daisuke Okanohara
License: BSD-3-clause

License: BSD-3-clause
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:
.
* Redistributions of source code must retain the above Copyright
notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above Copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution.
* Neither the name of the authors nor the names of its contributors
may be used to endorse or promote products derived from this
software without specific prior written permission.
.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Files: debian/*
Copyright: 2011-2012 Shaun Jackman <sjackman@debian.org>
2013-2015 Andreas Tille <tille@debian.org>
License: Expat

License: Expat
Permission is hereby granted, free of charge, to any person
obtaining a copy of this software and associated documentation
files (the "Software"), to deal in the Software without
restriction, including without limitation the rights to use,
copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the
Software is furnished to do so, subject to the following
conditions:
.
The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.
.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
OTHER DEALINGS IN THE SOFTWARE.

License: GPL-3+
This program is free software; you can redistribute it
and/or modify it under the terms of the GNU General Public
License as published by the Free Software Foundation; either
version 3 of the License, or (at your option) any later
version.
.
This program is distributed in the hope that it will be
useful, but WITHOUT ANY WARRANTY; without even the implied
warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the GNU General Public License for more
details.
.
You should have received a copy of the GNU General Public License
along with this software. If not, see <http://www.gnu.org/licenses/>.
.
On Debian systems, the full text of the GNU General Public
License version 3 can be found in the file
`/usr/share/common-licenses/GPL-3'.

abyss 2.0.2-2 / usr / share / doc / abyss / copyright