/usr/share/bedtools/genomes/human.hg38.genome is in bedtools 2.26.0+dfsg-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 | chr1 248956422
chr2 242193529
chr3 198295559
chr4 190214555
chr5 181538259
chr6 170805979
chr7 159345973
chrX 156040895
chr8 145138636
chr9 138394717
chr11 135086622
chr10 133797422
chr12 133275309
chr13 114364328
chr14 107043718
chr15 101991189
chr16 90338345
chr17 83257441
chr18 80373285
chr20 64444167
chr19 58617616
chrY 57227415
chr22 50818468
chr21 46709983
chr15_KI270905v1_alt 5161414
chr6_GL000256v2_alt 4929269
chr6_GL000254v2_alt 4827813
chr6_GL000251v2_alt 4795265
chr6_GL000253v2_alt 4677643
chr6_GL000250v2_alt 4672374
chr6_GL000255v2_alt 4606388
chr6_GL000252v2_alt 4604811
chr17_KI270857v1_alt 2877074
chr16_KI270853v1_alt 2659700
chr16_KI270728v1_random 1872759
chr17_GL000258v2_alt 1821992
chr5_GL339449v2_alt 1612928
chr14_KI270847v1_alt 1511111
chr17_KI270908v1_alt 1423190
chr14_KI270846v1_alt 1351393
chr5_KI270897v1_alt 1144418
chr7_KI270803v1_alt 1111570
chr19_GL949749v2_alt 1091841
chr19_KI270938v1_alt 1066800
chr19_GL949750v2_alt 1066390
chr19_GL949748v2_alt 1064304
chr19_GL949751v2_alt 1002683
chr19_GL949746v1_alt 987716
chr19_GL949752v1_alt 987100
chr8_KI270821v1_alt 985506
chr1_KI270763v1_alt 911658
chr6_KI270801v1_alt 870480
chr19_GL949753v2_alt 796479
chr19_GL949747v2_alt 729520
chr8_KI270822v1_alt 624492
chr4_GL000257v2_alt 586476
chr12_KI270904v1_alt 572349
chr4_KI270925v1_alt 555799
chr15_KI270852v1_alt 478999
chr15_KI270727v1_random 448248
chr9_KI270823v1_alt 439082
chr15_KI270850v1_alt 430880
chr1_KI270759v1_alt 425601
chr12_GL877876v1_alt 408271
chrUn_KI270442v1 392061
chr17_KI270862v1_alt 391357
chr15_GL383555v2_alt 388773
chr19_GL383573v1_alt 385657
chr4_KI270896v1_alt 378547
chr4_GL383528v1_alt 376187
chr17_GL383563v3_alt 375691
chr8_KI270810v1_alt 374415
chr1_GL383520v2_alt 366580
chr1_KI270762v1_alt 354444
chr15_KI270848v1_alt 327382
chr17_KI270909v1_alt 325800
chr14_KI270844v1_alt 322166
chr8_KI270900v1_alt 318687
chr10_GL383546v1_alt 309802
chr13_KI270838v1_alt 306913
chr8_KI270816v1_alt 305841
chr22_KI270879v1_alt 304135
chr8_KI270813v1_alt 300230
chr11_KI270831v1_alt 296895
chr15_GL383554v1_alt 296527
chr8_KI270811v1_alt 292436
chr18_GL383567v1_alt 289831
chrX_KI270880v1_alt 284869
chr8_KI270812v1_alt 282736
chr19_KI270921v1_alt 282224
chr17_KI270729v1_random 280839
chr17_JH159146v1_alt 278131
chrX_KI270913v1_alt 274009
chr6_KI270798v1_alt 271782
chr7_KI270808v1_alt 271455
chr22_KI270876v1_alt 263666
chr15_KI270851v1_alt 263054
chr22_KI270875v1_alt 259914
chr1_KI270766v1_alt 256271
chr19_KI270882v1_alt 248807
chr3_KI270778v1_alt 248252
chr15_KI270849v1_alt 244917
chr4_KI270786v1_alt 244096
chr12_KI270835v1_alt 238139
chr17_KI270858v1_alt 235827
chr19_KI270867v1_alt 233762
chr16_KI270855v1_alt 232857
chr8_KI270926v1_alt 229282
chr5_GL949742v1_alt 226852
chr3_KI270780v1_alt 224108
chr17_GL383565v1_alt 223995
chr2_KI270774v1_alt 223625
chr4_KI270790v1_alt 220246
chr11_KI270927v1_alt 218612
chr19_KI270932v1_alt 215732
chr11_KI270903v1_alt 214625
chr2_KI270894v1_alt 214158
chr14_GL000225v1_random 211173
chrUn_KI270743v1 210658
chr11_KI270832v1_alt 210133
chr7_KI270805v1_alt 209988
chr4_GL000008v2_random 209709
chr7_KI270809v1_alt 209586
chr19_KI270887v1_alt 209512
chr4_KI270789v1_alt 205944
chr3_KI270779v1_alt 205312
chr19_KI270914v1_alt 205194
chr19_KI270886v1_alt 204239
chr11_KI270829v1_alt 204059
chr14_GL000009v2_random 201709
chr21_GL383579v2_alt 201197
chr11_JH159136v1_alt 200998
chr19_KI270930v1_alt 200773
chrUn_KI270747v1 198735
chr18_GL383571v1_alt 198278
chr19_KI270920v1_alt 198005
chr6_KI270797v1_alt 197536
chr3_KI270935v1_alt 197351
chr17_KI270861v1_alt 196688
chr15_KI270906v1_alt 196384
chr5_KI270791v1_alt 195710
chr14_KI270722v1_random 194050
chr16_GL383556v1_alt 192462
chr13_KI270840v1_alt 191684
chr14_GL000194v1_random 191469
chr11_JH159137v1_alt 191409
chr19_KI270917v1_alt 190932
chr7_KI270899v1_alt 190869
chr19_KI270923v1_alt 189352
chr10_KI270825v1_alt 188315
chr19_GL383576v1_alt 188024
chr19_KI270922v1_alt 187935
chrUn_KI270742v1 186739
chr22_KI270878v1_alt 186262
chr19_KI270929v1_alt 186203
chr11_KI270826v1_alt 186169
chr6_KB021644v2_alt 185823
chr17_GL000205v2_random 185591
chr1_KI270765v1_alt 185285
chr19_KI270916v1_alt 184516
chr19_KI270890v1_alt 184499
chr3_KI270784v1_alt 184404
chr12_GL383551v1_alt 184319
chr20_KI270870v1_alt 183433
chrUn_GL000195v1 182896
chr1_GL383518v1_alt 182439
chr22_KI270736v1_random 181920
chr10_KI270824v1_alt 181496
chr14_KI270845v1_alt 180703
chr3_GL383526v1_alt 180671
chr13_KI270839v1_alt 180306
chr22_KI270733v1_random 179772
chrUn_GL000224v1 179693
chr10_GL383545v1_alt 179254
chrUn_GL000219v1 179198
chr5_KI270792v1_alt 179043
chr17_KI270860v1_alt 178921
chr19_GL000209v2_alt 177381
chr11_KI270830v1_alt 177092
chr9_KI270719v1_random 176845
chrUn_GL000216v2 176608
chr22_KI270928v1_alt 176103
chr1_KI270712v1_random 176043
chr6_KI270800v1_alt 175808
chr1_KI270706v1_random 175055
chr2_KI270776v1_alt 174166
chr18_KI270912v1_alt 174061
chr3_KI270777v1_alt 173649
chr5_GL383531v1_alt 173459
chr3_JH636055v2_alt 173151
chr14_KI270725v1_random 172810
chr5_KI270796v1_alt 172708
chr9_GL383541v1_alt 171286
chr19_KI270885v1_alt 171027
chr19_KI270919v1_alt 170701
chr19_KI270889v1_alt 170698
chr19_KI270891v1_alt 170680
chr19_KI270915v1_alt 170665
chr19_KI270933v1_alt 170537
chr19_KI270883v1_alt 170399
chr19_GL383575v2_alt 170222
chr19_KI270931v1_alt 170148
chr12_GL383550v2_alt 169178
chr13_KI270841v1_alt 169134
chrUn_KI270744v1 168472
chr18_KI270863v1_alt 167999
chr18_GL383569v1_alt 167950
chr12_GL877875v1_alt 167313
chr21_KI270874v1_alt 166743
chr3_KI270924v1_alt 166540
chr1_KI270761v1_alt 165834
chr3_KI270937v1_alt 165607
chr22_KI270734v1_random 165050
chr18_GL383570v1_alt 164789
chr5_KI270794v1_alt 164558
chr4_GL383527v1_alt 164536
chrUn_GL000213v1 164239
chr3_KI270936v1_alt 164170
chr3_KI270934v1_alt 163458
chr9_GL383539v1_alt 162988
chr3_KI270895v1_alt 162896
chr22_GL383582v2_alt 162811
chr3_KI270782v1_alt 162429
chr1_KI270892v1_alt 162212
chrUn_GL000220v1 161802
chr2_KI270767v1_alt 161578
chr2_KI270715v1_random 161471
chr2_KI270893v1_alt 161218
chrUn_GL000218v1 161147
chr18_GL383572v1_alt 159547
chr8_KI270817v1_alt 158983
chr4_KI270788v1_alt 158965
chrUn_KI270749v1 158759
chr7_KI270806v1_alt 158166
chr7_KI270804v1_alt 157952
chr18_KI270911v1_alt 157710
chrUn_KI270741v1 157432
chr17_KI270910v1_alt 157099
chr19_KI270884v1_alt 157053
chr19_GL383574v1_alt 155864
chr19_KI270888v1_alt 155532
chr3_GL000221v1_random 155397
chr11_GL383547v1_alt 154407
chr2_KI270716v1_random 153799
chr12_GL383553v2_alt 152874
chr6_KI270799v1_alt 152148
chr22_KI270731v1_random 150754
chrUn_KI270751v1 150742
chrUn_KI270750v1 148850
chr8_KI270818v1_alt 145606
chrX_KI270881v1_alt 144206
chr21_KI270873v1_alt 143900
chr2_GL383521v1_alt 143390
chr8_KI270814v1_alt 141812
chr12_GL383552v1_alt 138655
chrUn_KI270519v1 138126
chr2_KI270775v1_alt 138019
chr17_KI270907v1_alt 137721
chrUn_GL000214v1 137718
chr8_KI270901v1_alt 136959
chr2_KI270770v1_alt 136240
chr16_KI270854v1_alt 134193
chr8_KI270819v1_alt 133535
chr17_GL383564v2_alt 133151
chr2_KI270772v1_alt 133041
chr8_KI270815v1_alt 132244
chr5_KI270795v1_alt 131892
chr5_KI270898v1_alt 130957
chr20_GL383577v2_alt 128386
chr1_KI270708v1_random 127682
chr7_KI270807v1_alt 126434
chr5_KI270793v1_alt 126136
chr6_GL383533v1_alt 124736
chr2_GL383522v1_alt 123821
chr19_KI270918v1_alt 123111
chr12_GL383549v1_alt 120804
chr2_KI270769v1_alt 120616
chr4_KI270785v1_alt 119912
chr12_KI270834v1_alt 119498
chr7_GL383534v2_alt 119183
chr20_KI270869v1_alt 118774
chr21_GL383581v2_alt 116689
chr3_KI270781v1_alt 113034
chr17_KI270730v1_random 112551
chrUn_KI270438v1 112505
chr4_KI270787v1_alt 111943
chr18_KI270864v1_alt 111737
chr2_KI270771v1_alt 110395
chr1_GL383519v1_alt 110268
chr2_KI270768v1_alt 110099
chr1_KI270760v1_alt 109528
chr3_KI270783v1_alt 109187
chr17_KI270859v1_alt 108763
chr11_KI270902v1_alt 106711
chr18_GL383568v1_alt 104552
chr22_KI270737v1_random 103838
chr13_KI270843v1_alt 103832
chr22_KI270877v1_alt 101331
chr5_GL383530v1_alt 101241
chr11_KI270721v1_random 100316
chr22_KI270738v1_random 99375
chr22_GL383583v2_alt 96924
chr2_GL582966v2_alt 96131
chrUn_KI270748v1 93321
chrUn_KI270435v1 92983
chr5_GL000208v1_random 92689
chrUn_KI270538v1 91309
chr17_GL383566v1_alt 90219
chr16_GL383557v1_alt 89672
chr17_JH159148v1_alt 88070
chr5_GL383532v1_alt 82728
chr21_KI270872v1_alt 82692
chrUn_KI270756v1 79590
chr6_KI270758v1_alt 76752
chr12_KI270833v1_alt 76061
chr6_KI270802v1_alt 75005
chr21_GL383580v2_alt 74653
chr22_KB663609v1_alt 74013
chr22_KI270739v1_random 73985
chr9_GL383540v1_alt 71551
chrUn_KI270757v1 71251
chr2_KI270773v1_alt 70887
chr17_JH159147v1_alt 70345
chr11_KI270827v1_alt 67707
chr1_KI270709v1_random 66860
chrUn_KI270746v1 66486
chr16_KI270856v1_alt 63982
chr21_GL383578v2_alt 63917
chrUn_KI270753v1 62944
chr19_KI270868v1_alt 61734
chr9_GL383542v1_alt 60032
chr20_KI270871v1_alt 58661
chr12_KI270836v1_alt 56134
chr19_KI270865v1_alt 52969
chr1_KI270764v1_alt 50258
chrUn_KI270589v1 44474
chr14_KI270726v1_random 43739
chr19_KI270866v1_alt 43156
chr22_KI270735v1_random 42811
chr1_KI270711v1_random 42210
chrUn_KI270745v1 41891
chr1_KI270714v1_random 41717
chr22_KI270732v1_random 41543
chr1_KI270713v1_random 40745
chrUn_KI270754v1 40191
chr1_KI270710v1_random 40176
chr12_KI270837v1_alt 40090
chr9_KI270717v1_random 40062
chr14_KI270724v1_random 39555
chr9_KI270720v1_random 39050
chr14_KI270723v1_random 38115
chr9_KI270718v1_random 38054
chrUn_KI270317v1 37690
chr13_KI270842v1_alt 37287
chrY_KI270740v1_random 37240
chrUn_KI270755v1 36723
chr8_KI270820v1_alt 36640
chr1_KI270707v1_random 32032
chrUn_KI270579v1 31033
chrUn_KI270752v1 27745
chrUn_KI270512v1 22689
chrUn_KI270322v1 21476
chrM 16569
chrMT 16569
chrUn_GL000226v1 15008
chrUn_KI270311v1 12399
chrUn_KI270366v1 8320
chrUn_KI270511v1 8127
chrUn_KI270448v1 7992
chrUn_KI270521v1 7642
chrUn_KI270581v1 7046
chrUn_KI270582v1 6504
chrUn_KI270515v1 6361
chrUn_KI270588v1 6158
chrUn_KI270591v1 5796
chrUn_KI270522v1 5674
chrUn_KI270507v1 5353
chrUn_KI270590v1 4685
chrUn_KI270584v1 4513
chrUn_KI270320v1 4416
chrUn_KI270382v1 4215
chrUn_KI270468v1 4055
chrUn_KI270467v1 3920
chrUn_KI270362v1 3530
chrUn_KI270517v1 3253
chrUn_KI270593v1 3041
chrUn_KI270528v1 2983
chrUn_KI270587v1 2969
chrUn_KI270364v1 2855
chrUn_KI270371v1 2805
chrUn_KI270333v1 2699
chrUn_KI270374v1 2656
chrUn_KI270411v1 2646
chrUn_KI270414v1 2489
chrUn_KI270510v1 2415
chrUn_KI270390v1 2387
chrUn_KI270375v1 2378
chrUn_KI270420v1 2321
chrUn_KI270509v1 2318
chrUn_KI270315v1 2276
chrUn_KI270302v1 2274
chrUn_KI270518v1 2186
chrUn_KI270530v1 2168
chrUn_KI270304v1 2165
chrUn_KI270418v1 2145
chrUn_KI270424v1 2140
chrUn_KI270417v1 2043
chrUn_KI270508v1 1951
chrUn_KI270303v1 1942
chrUn_KI270381v1 1930
chrUn_KI270529v1 1899
chrUn_KI270425v1 1884
chrUn_KI270396v1 1880
chrUn_KI270363v1 1803
chrUn_KI270386v1 1788
chrUn_KI270465v1 1774
chrUn_KI270383v1 1750
chrUn_KI270384v1 1658
chrUn_KI270330v1 1652
chrUn_KI270372v1 1650
chrUn_KI270548v1 1599
chrUn_KI270580v1 1553
chrUn_KI270387v1 1537
chrUn_KI270391v1 1484
chrUn_KI270305v1 1472
chrUn_KI270373v1 1451
chrUn_KI270422v1 1445
chrUn_KI270316v1 1444
chrUn_KI270338v1 1428
chrUn_KI270340v1 1428
chrUn_KI270583v1 1400
chrUn_KI270334v1 1368
chrUn_KI270429v1 1361
chrUn_KI270393v1 1308
chrUn_KI270516v1 1300
chrUn_KI270389v1 1298
chrUn_KI270466v1 1233
chrUn_KI270388v1 1216
chrUn_KI270544v1 1202
chrUn_KI270310v1 1201
chrUn_KI270412v1 1179
chrUn_KI270395v1 1143
chrUn_KI270376v1 1136
chrUn_KI270337v1 1121
chrUn_KI270335v1 1048
chrUn_KI270378v1 1048
chrUn_KI270379v1 1045
chrUn_KI270329v1 1040
chrUn_KI270419v1 1029
chrUn_KI270336v1 1026
chrUn_KI270312v1 998
chrUn_KI270539v1 993
chrUn_KI270385v1 990
chrUn_KI270423v1 981
chrUn_KI270392v1 971
chrUn_KI270394v1 970
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