/usr/include/casacore/lattices/LatticeMath/MultiTermLatticeCleaner.tcc is in casacore-dev 2.2.0-2.
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1222 1223 1224 1225 1226 1227 1228 1229 1230 1231 1232 1233 1234 1235 | //# Copyright (C) 1997,1998,1999,2000,2001,2002,2003
//# Associated Universities, Inc. Washington DC, USA.
//#
//# This library is free software; you can redistribute it and/or modify it
//# under the terms of the GNU Library General Public License as published by
//# the Free Software Foundation; either version 2 of the License, or (at your
//# option) any later version.
//#
//# This library is distributed in the hope that it will be useful, but WITHOUT
//# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
//# FITNESS FOR A PARTICULAR PURPOSE. See the GNU Library General Public
//# License for more details.
//#
//# You should have received a copy of the GNU Library General Public License
//# along with this library; if not, write to the Free Software Foundation,
//# Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA.
//#
//# Correspondence concerning AIPS++ should be addressed as follows:
//# Internet email: aips2-request@nrao.edu.
//# Postal address: AIPS++ Project Office
//# National Radio Astronomy Observatory
//# 520 Edgemont Road
//# Charlottesville, VA 22903-2475 USA
//#
//# $Id: MultiTermLatticeCleaner.cc 19909 2008-04-23 02:08:02Z UrvashiRau $
#ifndef LATTICES_MULTITERMLATTICECLEANER_TCC
#define LATTICES_MULTITERMLATTICECLEANER_TCC
#include <casacore/casa/Arrays/Matrix.h>
#include <casacore/casa/Arrays/ArrayMath.h>
#include <casacore/casa/Logging/LogIO.h>
#include <casacore/casa/OS/File.h>
#include <casacore/casa/Containers/Record.h>
#include <casacore/lattices/LatticeMath/LatticeCleaner.h>
#include <casacore/lattices/LatticeMath/MultiTermLatticeCleaner.h>
#include <casacore/lattices/LatticeMath/LatticeCleanProgress.h>
#include <casacore/lattices/Lattices/TiledLineStepper.h>
#include <casacore/lattices/Lattices/LatticeStepper.h>
#include <casacore/lattices/Lattices/LatticeNavigator.h>
#include <casacore/lattices/Lattices/LatticeIterator.h>
#include <casacore/lattices/Lattices/TempLattice.h>
#include <casacore/lattices/LatticeMath/LatticeFFT.h>
#include <casacore/lattices/LEL/LatticeExpr.h>
#include <casacore/lattices/Lattices/SubLattice.h>
#include <casacore/lattices/LRegions/LCBox.h>
#include <casacore/casa/Arrays/Slicer.h>
#include <casacore/lattices/LEL/LatticeExpr.h>
#include <casacore/lattices/LEL/LatticeExprNode.h>
#include <casacore/casa/OS/HostInfo.h>
#include <casacore/casa/System/PGPlotter.h>
#include <casacore/casa/Arrays/ArrayError.h>
#include <casacore/casa/Arrays/ArrayIter.h>
#include <casacore/casa/Arrays/VectorIter.h>
#include <casacore/casa/Utilities/GenSort.h>
#include <casacore/casa/BasicSL/String.h>
#include <casacore/casa/Utilities/Assert.h>
#include <casacore/casa/Utilities/Fallible.h>
#include <casacore/casa/BasicSL/Constants.h>
#include <casacore/casa/Logging/LogSink.h>
#include <casacore/casa/Logging/LogMessage.h>
#include <casacore/casa/Arrays/ArrayMath.h>
#include <casacore/casa/Arrays/Matrix.h>
#include <casacore/scimath/Mathematics/MatrixMathLA.h>
namespace casacore { //# NAMESPACE CASACORE - BEGIN
#define MIN(a,b) ((a)<=(b) ? (a) : (b))
#define MAX(a,b) ((a)>=(b) ? (a) : (b))
template<class T> MultiTermLatticeCleaner<T>::MultiTermLatticeCleaner():
ntaylor_p(2),donePSF_p(False),donePSP_p(False),doneCONV_p(False)
{
adbg=False;
}
template <class T> MultiTermLatticeCleaner<T>::
MultiTermLatticeCleaner(const MultiTermLatticeCleaner<T> & other):
ntaylor_p(other.ntaylor_p) //And others... minus some...
{
}
template<class T> MultiTermLatticeCleaner<T> & MultiTermLatticeCleaner<T>::
operator=(const MultiTermLatticeCleaner<T> & other) {
if (this != &other) {
ntaylor_p = other.ntaylor_p; // and others..... minus some
}
return *this;
}
template<class T> MultiTermLatticeCleaner<T>::
~MultiTermLatticeCleaner()
{
manageMemory(False);
}
template <class T>
Bool MultiTermLatticeCleaner<T>::setscales(const Vector<Float> & scales)
{
nscales_p = scales.nelements();
scaleSizes_p.resize();
scaleSizes_p = scales;
totalScaleFlux_p.resize(nscales_p);
totalScaleFlux_p.set(0.0);
return True;
}
template <class T>
Bool MultiTermLatticeCleaner<T>::setntaylorterms(const int & nterms)
{
ntaylor_p = nterms;
psfntaylor_p = 2*nterms-1;
totalTaylorFlux_p.resize(ntaylor_p);
totalTaylorFlux_p.set(0.0);
return True;
}
// Allocate memory, based on nscales and ntaylor
template <class T>
Bool MultiTermLatticeCleaner<T>::initialise(Int nx, Int ny)
{
LogIO os(LogOrigin("MultiTermLatticeCleaner", "initialise()", WHERE));
/* Verify Image Shapes */
// nx_p = model.shape(0);
nx_p = nx;
ny_p = ny;
if(adbg) os << "Checking shapes" << LogIO::POST;
/* Verify nscales_p and ntaylor_p */
AlwaysAssert(nscales_p>0, AipsError);
AlwaysAssert(ntaylor_p>0, AipsError);
if(adbg) os << "Start allocating mem" << LogIO::POST;
/* Allocate memory for many many TempLattices. */
manageMemory(True);
/* Set up the default Mask image */
setupFFTMask();
/* Create the scaled blobs and their FTs */
setupBlobs();
if(adbg) os << "Finished initializing MultiTermLatticeCleaner" << LogIO::POST;
return True;
}
template <class T>
Bool MultiTermLatticeCleaner<T>::setcontrol(CleanEnums::CleanType cleanType,
const Int niter,
const Float gain,
const Quantity& aThreshold,
const Bool choose)
{
itsCleanType=cleanType;
itsMaxNiter=niter;
itsGain=gain;
itsThreshold=aThreshold;
totalIters_p=0;
return True;
}
template <class T>
Bool MultiTermLatticeCleaner<T>::setpsf(int order, Lattice<T> & psf)
{
AlwaysAssert((order>=(int)0 && order<(int)vecPsf_p.nelements()), AipsError);
if(order==0) AlwaysAssert(validatePsf(psf), AipsError);
//AlwaysAssert(psf, AipsError);
vecPsf_p[order]->copyData(LatticeExpr<Float>(psf));
vecPsfFT_p[order]->copyData(LatticeExpr<Complex>(toComplex((*fftmask_p)*(*vecPsf_p[order]))));
LatticeFFT::cfft2d(*vecPsfFT_p[order], True);
return True;
}
/* Input : Dirty Images */
template <class T>
Bool MultiTermLatticeCleaner<T>::setresidual(int order, Lattice<T> & dirty)
{
AlwaysAssert((order>=(int)0 && order<(int)vecDirty_p.nelements()), AipsError);
//AlwaysAssert(dirty, AipsError);
vecDirty_p[order]->copyData(LatticeExpr<Float>(dirty));
return True;
}
/* Input : Model Component Image */
template <class T>
Bool MultiTermLatticeCleaner<T>::setmodel(int order, Lattice<T> & model)
{
AlwaysAssert((order>=(int)0 && order<(int)vecModel_p.nelements()), AipsError);
//AlwaysAssert(model, AipsError);
vecModel_p[order]->copyData(LatticeExpr<Float>(model));
totalTaylorFlux_p[order] = (sum( LatticeExpr<Float>(*vecModel_p[order]) )).getFloat();
return True;
}
/* Input : Mask */
template <class T>
Bool MultiTermLatticeCleaner<T>::setmask(Lattice<T> & mask)
{
//AlwaysAssert(mask, AipsError);
if(!itsMask) itsMask = new TempLattice<T>(mask.shape(), memoryMB_p);
itsMask->copyData(LatticeExpr<Float>(mask));
return True;
}
/* Output : Model Component Image */
template <class T>
Bool MultiTermLatticeCleaner<T>::getmodel(int order, Lattice<T> & model)
{
AlwaysAssert((order>=(int)0 && order<(int)vecModel_p.nelements()), AipsError);
//AlwaysAssert(model, AipsError);
model.copyData(LatticeExpr<Float>(*vecModel_p[order]));
return True;
}
/* Output Residual Image */
template <class T>
Bool MultiTermLatticeCleaner<T>::getresidual(int order, Lattice<T> & residual)
{
AlwaysAssert((order>=(int)0 && order<(int)vecDirty_p.nelements()), AipsError);
//AlwaysAssert(residual, AipsError);
residual.copyData(LatticeExpr<Float>(*vecDirty_p[order]));
return True;
}
/* Output Hessian matrix */
template <class T>
Bool MultiTermLatticeCleaner<T>::getinvhessian(Matrix<Double> & invhessian)
{
invhessian.resize((*invMatA_p[0]).shape());
invhessian = (*invMatA_p[0]); //*(*matA_p[0])(0,0);
return True;
}
/* Do the deconvolution */
template <class T>
Int MultiTermLatticeCleaner<T>::mtclean(LatticeCleanProgress* progress)
{
LogIO os(LogOrigin("MultiTermLatticeCleaner", "mtclean()", WHERE));
if(adbg)os << "SOLVER for Multi-Frequency Synthesis deconvolution" << LogIO::POST;
Int convergedflag = 0;
Bool choosespec = True;
//static Int totalIters=0;
/* Set up the Mask image */
setupUserMask();
/* Compute the current peak residual */
Float zmaxval=0.0;
IPosition zmaxpos;
findMaxAbsLattice((*mask_p),(*vecDirty_p[0]),zmaxval,zmaxpos);
os << "Initial Max Residual at iteration " << totalIters_p << " : " << zmaxval << " at " << zmaxpos << LogIO::POST;
if(totalIters_p==0)
{
for(Int i=0;i<2*ntaylor_p-1;i++)
{
findMaxAbsLattice((*mask_p),(*vecPsf_p[i]),zmaxval,zmaxpos);
os << "Psf " << i << " : " << zmaxval << " at " << zmaxpos << LogIO::POST;
}
}
/* Compute all convolutions and the matrix A */
/* If matrix is not invertible, return ! */
if( computeMatrixA() == -2 )
return -2;
/* Compute the convolutions of the current residual with all PSFs and scales */
computeRHS();
/* Compute the flux limits that determine the depth of the minor cycles. */
Float fluxlimit =0.0;
Float loopgain = itsGain;
Float thresh = itsThreshold.getValue("Jy");
computeFluxLimit(fluxlimit,thresh);
/* Initialize persistent variables */
gip = IPosition(4,nx_p,ny_p,1,1);
Float maxval,globalmaxval=-1e+10;
IPosition maxpos(4,0),globalmaxpos(4,0);
Int maxscaleindex=0;
Int niters = itsMaxNiter;
/********************** START MINOR CYCLE ITERATIONS ***********************/
//Int numiters = MIN(40,niters-totalIters_p);
Int numiters = niters-totalIters_p;
//cout << "niters,itsMaxiter : " << niters << " ,totalIters_p : " << totalIters_p << " , numiters : " << numiters << endl;
/* If no iterations */
if(numiters<=0)
{
os << "Reached max number of iterations" << LogIO::POST;
convergedflag=-1;
return (convergedflag);
}
for(Int itercount=0;itercount<numiters;itercount++)
{
globalmaxval=-1e+10;
/* Find the best component over all scales */
for(Int scale=0;scale<nscales_p;scale++)
{
/* Solve the matrix eqn for all points in the lattice */
solveMatrixEqn(scale);
/* Now use the solved-for sets of coefficients and compute a penalty function */
computePenaltyFunction(scale,loopgain,choosespec);
/* Find the peak of the penalty function to choose the update direction */
// Find the location and TAYLOR term of Max Eps sq from twork.
findMaxAbsLattice((*mask_p),*tWork_p,maxval,maxpos);
/* Record the maximum penalty-function value and chosen scale */
//if(maxval > globalmaxval)
if((maxval*scaleBias_p[scale]) > globalmaxval)
{
globalmaxval = maxval;
globalmaxpos = maxpos;
maxscaleindex = scale;
}
}// end of for scale
/* Update the current solution by this chosen step */
updateSolution(globalmaxpos,maxscaleindex,loopgain);
/* Compute peak residuals */
Float maxres=0.0;
IPosition maxrespos;
findMaxAbsLattice((*mask_p),(*matR_p[IND2(0,0)]),maxres,maxrespos);
Float norma = (1.0/(*matA_p[0])(0,0));
Float rmaxval = maxres*norma;
/* Print out coefficients at each iteration */
//if(adbg)
{
//os << "[" << totalIters_p << "] Res: " << rmaxval << " Max: " << globalmaxval;
os << "[" << totalIters_p << "] Res: " << rmaxval;
os << " Pos: " << globalmaxpos << " Scale: " << scaleSizes_p[maxscaleindex];
os << " Coeffs: ";
for(Int taylor=0;taylor<ntaylor_p;taylor++)
os << (*matCoeffs_p[IND2(taylor,maxscaleindex)]).getAt(globalmaxpos) << " ";
//os << " OrigRes: ";
//for(Int taylor=0;taylor<ntaylor_p;taylor++)
// os << (*matR_p[IND2(taylor,maxscaleindex)]).getAt(globalmaxpos) << " ";
os << LogIO::POST;
}
/* Increment iteration count */
totalIters_p++;
/* Check for convergence */
convergedflag = checkConvergence(choosespec,thresh,fluxlimit);
if(convergedflag == 2)
{
os << "Reached Stopping Threshold" << LogIO::POST;
break;
}
if(convergedflag == 1)
{
os << "Reached Flux Limit for this Major cycle" << LogIO::POST;
convergedflag = 0;
break;
}
if(totalIters_p==itsMaxNiter)
{
os << "Reached max number of iterations. Failed to reach stopping threshold" << LogIO::POST;
convergedflag=-1;
break;
}
}
/********************** END MINOR CYCLE ITERATIONS ***********************/
/* Print out flux counts so far */
//if(adbg)
{
for(Int scale=0;scale<nscales_p;scale++) os << "Scale " << scale+1 << " with " << scaleSizes_p[scale] << " pixels has total flux = " << totalScaleFlux_p[scale] << " (in this run) " << LogIO::POST;
for(Int taylor=0;taylor<ntaylor_p;taylor++) os << "Taylor " << taylor << " has total flux = " << totalTaylorFlux_p[taylor] << LogIO::POST;
}
return(convergedflag);
}
/* Indexing Wonders... */
template <class T>
Int MultiTermLatticeCleaner<T>::IND2(Int taylor, Int scale)
{
return taylor * nscales_p + scale;
}
template <class T>
Int MultiTermLatticeCleaner<T>::IND4(Int taylor1, Int taylor2, Int scale1, Int scale2)
{
Int tt1=taylor1;
Int tt2=taylor2;
Int ts1=scale1;
Int ts2=scale2;
scale1 = MAX(ts1,ts2);
scale2 = MIN(ts1,ts2);
taylor1 = MAX(tt1,tt2);
taylor2 = MIN(tt1,tt2);
Int totscale = nscales_p*(nscales_p+1)/2;
return ((taylor1*(taylor1+1)/2)+taylor2)*totscale + ((scale1*(scale1+1)/2)+scale2);
}
/*************************************
* Number of TempLattices
*************************************/
template <class T>
Int MultiTermLatticeCleaner<T>::numberOfTempLattices(Int nscales, Int ntaylor)
{
Int ntotal4d = (nscales*(nscales+1)/2) * (ntaylor*(ntaylor+1)/2);
return ntotal4d + 6 + 2 + (2+1)*nscales + (1+1)*ntaylor + 2*nscales*ntaylor;
}
/*************************************
* Allocate Memory
*************************************/
template <class T>
Int MultiTermLatticeCleaner<T>::manageMemory(Bool direction)
{
LogIO os(LogOrigin("MultiTermLatticeCleaner", "manageMemory()", WHERE));
// Define max memory usage for all TempLattices. (half of available);
memoryMB_p = Double(HostInfo::memoryTotal()/1024)/(2.0); // ? /(16.0) ?
Int ntemp = numberOfTempLattices(nscales_p,ntaylor_p);
Int numMB = nx_p*ny_p*4*ntemp/(1024*1024);
memoryMB_p = MIN(memoryMB_p, numMB);
if(direction)
{
os << "This algorithm is allocating " << numMB << " MBytes for " << ntemp << " TempLattices " << LogIO::POST;
if(adbg)os << "Allocating " << memoryMB_p << " MBytes." << LogIO::POST;
}
else
{
os << "Releasing " << numMB << " MBytes " << LogIO::POST;
}
if(adbg && direction)os << "Allocating memory ... " ;
if(adbg && !direction)os << "Freeing memory ... " ;
Int ntotal4d = (nscales_p*(nscales_p+1)/2) * (ntaylor_p*(ntaylor_p+1)/2);
//gip = IPosition(2,ntaylor_p,ntaylor_p);
IPosition tgip(2,ntaylor_p,ntaylor_p);
// Small A matrix to be inverted for each point..
matA_p.resize(nscales_p); invMatA_p.resize(nscales_p);
for(Int i=0;i<nscales_p;i++)
{
if(direction)
{
matA_p[i] = new Matrix<Double>(tgip);
invMatA_p[i] = new Matrix<Double>(tgip);
}
else
{
delete matA_p[i] ;
delete invMatA_p[i] ;
}
}
/// Make this read from model.shape() or image.shape()
gip = IPosition(4,nx_p,ny_p,1,1);
// I_D and mask
if(direction)
{
dirty_p = new TempLattice<Float>(gip, memoryMB_p);
dirtyFT_p = new TempLattice<Complex>(gip, memoryMB_p);
mask_p = new TempLattice<Float>(gip, memoryMB_p);
fftmask_p = new TempLattice<Float>(gip, memoryMB_p);
// Temporary work-holder
cWork_p = new TempLattice<Complex>(gip,memoryMB_p);
tWork_p = new TempLattice<Float>(gip,memoryMB_p);
}
else
{
delete dirty_p;
delete dirtyFT_p;
delete fftmask_p;
delete mask_p;
delete cWork_p;
delete tWork_p;
}
// Mask
if(direction) itsMask=0;
else
{
if(itsMask){ delete itsMask; itsMask=0;}
}
// Scales
vecScales_p.resize(nscales_p);
vecScalesFT_p.resize(nscales_p);
for(Int i=0;i<nscales_p;i++)
{
if(direction)
{
vecScales_p[i] = new TempLattice<Float>(gip,memoryMB_p);
vecScalesFT_p[i] = new TempLattice<Complex>(gip,memoryMB_p);
}
else
{
delete vecScales_p[i];
delete vecScalesFT_p[i];
}
}
// Psfs and Models
vecPsf_p.resize(psfntaylor_p);
vecPsfFT_p.resize(psfntaylor_p);
for(Int i=0;i<psfntaylor_p;i++)
{
if(direction)
{
vecPsf_p[i] = new TempLattice<Float>(gip,memoryMB_p);
vecPsfFT_p[i] = new TempLattice<Complex>(gip,memoryMB_p);
}
else
{
delete vecPsf_p[i];
delete vecPsfFT_p[i];
}
}
// Dirty/Residual Images
vecDirty_p.resize(ntaylor_p);
vecModel_p.resize(ntaylor_p);
for(Int i=0;i<ntaylor_p;i++)
{
if(direction)
{
vecDirty_p[i] = new TempLattice<Float>(gip,memoryMB_p);
vecModel_p[i] = new TempLattice<Float>(gip,memoryMB_p);
}
else
{
delete vecDirty_p[i];
delete vecModel_p[i];
}
}
// Psf * Scales
// matPsfConvScales_p.resize(ntaylor_p*nscales_p);
// for(Int i=0;i<nscales_p*ntaylor_p;i++) matPsfConvScales_p = new TempLattice<Float>(gip,memoryMB_p);
// Set up the latticeiterators also
IPosition shapeOut;
IPosition cursorShape;
if(direction)
{
AlwaysAssert (tWork_p->isWritable(), AipsError);
shapeOut = IPosition(tWork_p->shape());
cursorShape = IPosition(tWork_p->niceCursorShape());
}
else
{
shapeOut = gip;
cursorShape = gip;
}
LatticeStepper stepper(shapeOut, cursorShape, LatticeStepper::RESIZE);
if(direction)itertWork_p = new LatticeIterator<Float>((*tWork_p), stepper);
else delete itertWork_p;
// (Psf * Scales) * (Psf * Scales)
cubeA_p.resize(ntotal4d);
itercubeA_p.resize(ntotal4d);
for(Int i=0;i<ntotal4d;i++)
{
if(direction)
{
cubeA_p[i] = new TempLattice<Float>(gip,memoryMB_p);
itercubeA_p[i] = new LatticeIterator<Float>((*cubeA_p[i]),stepper);
}
else
{
delete cubeA_p[i];
delete itercubeA_p[i];
}
}
// I_D * (Psf * Scales)
matR_p.resize(ntaylor_p*nscales_p);
itermatR_p.resize(ntaylor_p*nscales_p);
// Coefficients to be solved for.
matCoeffs_p.resize(ntaylor_p*nscales_p);
itermatCoeffs_p.resize(ntaylor_p*nscales_p);
for(Int i=0;i<ntaylor_p*nscales_p;i++)
{
if(direction)
{
matR_p[i] = new TempLattice<Float>(gip,memoryMB_p);
itermatR_p[i] = new LatticeIterator<Float>((*matR_p[i]),stepper);
matCoeffs_p[i] = new TempLattice<Float>(gip,memoryMB_p);
itermatCoeffs_p[i] = new LatticeIterator<Float>((*matCoeffs_p[i]),stepper);
}
else
{
delete matR_p[i];
delete itermatR_p[i];
delete matCoeffs_p[i];
delete itermatCoeffs_p[i];
}
}
if(adbg) os << "done" << LogIO::POST;
return 0;
}
/*************************************
* Add two subLattices.. -- same code as in copyData.
*************************************/
template <class T>
Int MultiTermLatticeCleaner<T>::addTo(Lattice<Float>& to, const Lattice<Float>& add, Float multiplier)
{
// Check the lattice is writable.
// Check the shape conformance.
AlwaysAssert (to.isWritable(), AipsError);
const IPosition shapeIn = add.shape();
const IPosition shapeOut = to.shape();
AlwaysAssert (shapeIn.isEqual (shapeOut), AipsError);
IPosition cursorShape = to.niceCursorShape();
LatticeStepper stepper (shapeOut, cursorShape, LatticeStepper::RESIZE);
LatticeIterator<Float> toIter(to, stepper);
RO_LatticeIterator<Float> addIter(add, stepper);
for (addIter.reset(), toIter.reset(); !addIter.atEnd();addIter++, toIter++)
{
toIter.rwCursor()+=addIter.cursor()*multiplier;
}
return 0;
}
/***************************************
* Set up the Masks.
****************************************/
template <class T>
Int MultiTermLatticeCleaner<T>::setupFFTMask()
{
/* Set up fftmask - inner quarter */
(*fftmask_p).set(0.0);
IPosition mblc(4,nx_p/4,ny_p/4,0,0);
IPosition mtrc(4,3*nx_p/4,3*ny_p/4,0,0);
IPosition minc(4, 1);
LCBox::verify(mblc,mtrc,minc,(*fftmask_p).shape());
LCBox regmask(mblc,mtrc,(*fftmask_p).shape());
SubLattice<Float> smask((*fftmask_p),regmask,True);
smask.set(1.0);
return 0;
}/* end of setupFFTMask() */
template <class T>
Int MultiTermLatticeCleaner<T>::setupUserMask()
{
/* Copy the input mask */
if(itsMask)
{
Int pol=0;
IPosition blc1(4,0,0,pol,0);
IPosition trc1(4,nx_p,ny_p,pol,0);
IPosition inc1(4, 1);
LCBox::verify(blc1,trc1,inc1,itsMask->shape());
LCBox singlepolmask(blc1,trc1,itsMask->shape());
(mask_p)->copyData(SubLattice<Float>(*itsMask,singlepolmask,True));
/* Reconcile the two masks */
(*mask_p).copyData(LatticeExpr<Float>((*mask_p)*(*fftmask_p)));
}
else
{
(*mask_p).copyData(LatticeExpr<Float>((*fftmask_p)));
}
return 0;
}/* end of setupUserMask() */
/***************************************
* Set up the Blobs of various scales.
****************************************/
template <class T>
Int MultiTermLatticeCleaner<T>::setupBlobs()
{
LogIO os(LogOrigin("MultiTermLatticeCleaner", "setupBlobs", WHERE));
// Set the scale sizes
if(scaleSizes_p.nelements()==0)
{
scaleSizes_p.resize(nscales_p);
Float scaleInc = 2.0;
scaleSizes_p[0] = 0.0;
//os << "scale 1 = " << scaleSizes_p(0) << " pixels" << LogIO::POST;
for (Int scale=1; scale<nscales_p;scale++)
{
scaleSizes_p[scale] = scaleInc * pow(10.0, (Float(scale)-2.0)/2.0) ;
//os << "scale " << scale+1 << " = " << scaleSizes_p(scale) << " pixels" << LogIO::POST;
}
}
scaleBias_p.resize(nscales_p);
totalScaleFlux_p.resize(nscales_p);
//Float prefScale=2.0;
//Float fac=6.0;
if(nscales_p>1)
{
for(Int scale=0;scale<nscales_p;scale++)
{
//scaleBias_p[scale] = 1 - 0.4 * scaleSizes_p[scale]/scaleSizes_p(nscales_p-1);
scaleBias_p[scale] = 1.0;
//////scaleBias_p[scale] = pow((Float)scale/fac,prefScale)*exp(-1.0*scale/fac)/(pow(prefScale/fac,prefScale)*exp(-1.0*prefScale/fac));
//scaleBias_p[scale] = pow((Float)(scale+1)/fac,prefScale)*exp(-1.0*(scale+1)/fac);
os << "scale " << scale+1 << " = " << scaleSizes_p(scale) << " pixels with bias = " << scaleBias_p[scale] << LogIO::POST;
totalScaleFlux_p[scale]=0.0;
}
}
else scaleBias_p[0]=1.0;
// Compute the scaled blobs - prolate spheroids with tapering and truncation
// vecScales_p, scaleSizes_p, vecScalesFT_p
if(!donePSP_p)
{
// Compute h(s1), h(s2),... depending on the number of scales chosen.
// NSCALES = 1;
if(adbg) os << "Calculating scales and their FTs " << LogIO::POST;
for (Int scale=0; scale<nscales_p;scale++)
{
AlwaysAssert(vecScales_p[scale], AipsError);
AlwaysAssert(vecScalesFT_p[scale], AipsError);
// First make the scale
makeScale(*vecScales_p[scale], scaleSizes_p(scale));
// Now store the XFR
vecScalesFT_p[scale]->copyData(LatticeExpr<Complex>(toComplex((*fftmask_p)*(*vecScales_p[scale]))));
// Now FFT
LatticeFFT::cfft2d(*vecScalesFT_p[scale], True);
if(0)//(adbg)
{
String llab("blob_"+String::toString((Int)scaleSizes_p(scale))+".im");
gip = IPosition(4,nx_p,ny_p,1,1);
TempLattice<Float> store(gip,memoryMB_p);
store.copyData(LatticeExpr<Float>(real(*vecScalesFT_p[scale])));
String fllab("blobft_"+String::toString((Int)scaleSizes_p(scale))+".im");
}
}
donePSP_p=True;
}
return 0;
}/* end of setupBlobs() */
/***************************************
* Compute convolutions and the A matrix.
****************************************/
template <class T>
Int MultiTermLatticeCleaner<T>::computeMatrixA()
{
LogIO os(LogOrigin("MultiTermLatticeCleaner", "computeMatrixA", WHERE));
gip = IPosition(4,nx_p,ny_p,1,1);
if(!doneCONV_p)
{
// Compute the convolutions of the smoothed psfs with each other.
// Compute Assxx
// Compute A100, A101, A102
// A110, A111, A112
// A120, A121, A122 for h(s1)
// Compute A200, A201, A202
// A210, A211, A212
// A220, A221, A222 for h(s2)
//... depending on the number of scales chosen
// (PSF * scale) * (PSF * scale) -> cubeA_p [nx_p,ny_p,ntaylor,ntaylor,nscales]
os << "Calculating PSF and Scale convolutions " << LogIO::POST;
for (Int taylor1=0; taylor1<ntaylor_p;taylor1++)
for (Int taylor2=0; taylor2<=taylor1;taylor2++)
for (Int scale1=0; scale1<nscales_p;scale1++)
for (Int scale2=0; scale2<=scale1;scale2++)
{
Int ttay1 = taylor1+taylor2;
if(adbg)
os << "Calculating (PSF_"<< taylor1 << " * Scale_"<<scale1+1 << ") * (PSF_"<< taylor2<<" * Scale_"<<scale2+1<<") using taylor "<< ttay1 << LogIO::POST;
LatticeExpr<Complex> dpsExpr(((*vecPsfFT_p[ttay1]) *(*vecPsfFT_p[0]))*(*vecScalesFT_p[scale1])*(*vecScalesFT_p[scale2]));
cWork_p->copyData(dpsExpr);
LatticeFFT::cfft2d(*cWork_p, False);
AlwaysAssert(cubeA_p[IND4(taylor1,taylor2,scale1,scale2)], AipsError);
LatticeExpr<Float> realWork2(real(*cWork_p));
cubeA_p[IND4(taylor1,taylor2,scale1,scale2)]->copyData(realWork2);
Float zmaxval=0.0; IPosition zmaxpos;
findMaxAbsLattice((*mask_p),(*cubeA_p[IND4(taylor1,taylor2,scale1,scale2)]),zmaxval,zmaxpos);
//if(adbg) os << "Max (result) : " << zmaxval << " at " << zmaxpos << LogIO::POST;
}
// Construct A, invA for each scale.
IPosition wip(4,0,0,0,0);
wip[0]=(nx_p/2); wip[1]=(ny_p/2);
Int stopnow=False;
for (Int scale=0; scale<nscales_p;scale++)
{
// Fill up A
for (Int taylor1=0; taylor1<ntaylor_p;taylor1++)
for (Int taylor2=0; taylor2<ntaylor_p;taylor2++)
{
(*matA_p[scale])(taylor1,taylor2) = (*cubeA_p[IND4(taylor1,taylor2,scale,scale)])(wip);
/* Check for exact zeros. Usually indicative of error */
if( fabs( (*matA_p[scale])(taylor1,taylor2) ) == 0.0 ) stopnow = True;
}
os << "The Matrix [A] is : " << (*matA_p[scale]) << LogIO::POST;
if(stopnow)
{
os << "Multi-Term Hessian has exact zeros. Not proceeding further." << LogIO::WARN << endl;
return -2;
}
/* If all elements are non-zero, check by brute-force if the rows/cols
are nearly linearly dependant, making the matrix nearly singular. */
Vector<Float> ratios(ntaylor_p);
Float tsum=0.0;
for(Int taylor1=0; taylor1<ntaylor_p-1; taylor1++)
{
for(Int taylor2=0; taylor2<ntaylor_p; taylor2++)
ratios[taylor2] = (*matA_p[scale])(taylor1,taylor2) / (*matA_p[scale])(taylor1+1,taylor2);
tsum=0.0;
for(Int taylor2=0; taylor2<ntaylor_p-1; taylor2++)
tsum += fabs(ratios[taylor2] - ratios[taylor2+1]);
tsum /= ntaylor_p-1;
if(tsum < 1e-04) stopnow=True;
//cout << "Ratios for row " << taylor1 << " are " << ratios << endl;
//cout << "tsum : " << tsum << endl;
}
if(stopnow)
{
os << "Multi-Term Hessian has linearly-dependent rows/cols. Not proceeding further." << LogIO::WARN << endl;
return -2;
}
/* Try to invert the matrix. If it fails, return.
The invertSymPosDef will check if it's positive definite or not.
By construction, it should be pos-def. */
// Compute inv(A)
// Use MatrixMathLA::invert
// or Use invertSymPosDef...
//
try
{
Double deter=0.0;
//invert((*invMatA_p[scale]),deter,(*matA_p[scale]));
//os << "Matrix Inverse : inv(A) : " << (*invMatA_p[scale]) << LogIO::POST;
invertSymPosDef((*invMatA_p[scale]),deter,(*matA_p[scale]));
os << "Lapack Cholesky Decomposition Inverse of [A] is : " << (*invMatA_p[scale]) << LogIO::POST;
//if(adbg)os << "A matrix determinant : " << deter << LogIO::POST;
//if(fabs(deter) < 1.0e-08) os << "SINGULAR MATRIX !! STOP!! " << LogIO::EXCEPTION;
}
catch(AipsError &x)
{
os << "Cannot Invert matrix : " << x.getMesg() << LogIO::WARN;
return -2;
}
}
doneCONV_p=True;
}
return 0;
}/* end of computeMatrixA() */
/***************************************
* Compute convolutions of the residual images ( all specs ) with scales.
* --> the Right-Hand-Side of the matrix equation.
****************************************/
template <class T>
Int MultiTermLatticeCleaner<T>::computeRHS()
{
LogIO os(LogOrigin("MultiTermLatticeCleaner", "computeRHS()", WHERE));
IPosition blc1(4,0,0,0,0);
IPosition trc1(4,nx_p,ny_p,0,0);
IPosition inc1(4, 1);
/* Compute R10 = I_D*B10, R11 = I_D*B11, R12 = I_D*B12
* Compute R20 = I_D*B20, R21 = I_D*B21, R22 = I_D*B22
* ... depending on the number of scales chosen.
*/
//cout << "Writing residual images to disk..." << endl;
//storeAsImg("temp_residual_0",residual(0));
//storeAsImg("temp_residual_1",residualspec(0,1));
/* I_D * (PSF * scale) -> matR_p [nx_p,ny_p,ntaylor,nscales] */
os << "Calculating convolutions of dirty image with scales and PSFs " << LogIO::POST;
for (Int taylor=0; taylor<ntaylor_p;taylor++)
{
/* Compute FT of dirty image */
dirtyFT_p->copyData(LatticeExpr<Complex>(toComplex((*fftmask_p)*(*vecDirty_p[taylor]))));
LatticeFFT::cfft2d(*dirtyFT_p, True);
for (Int scale=0; scale<nscales_p;scale++)
{
if(adbg)os << "Calculating I_D * (PSF_"<< taylor << " * Scale_" << scale+1 << ")"<< LogIO::POST;
LatticeExpr<Complex> dpsExpr( (*dirtyFT_p)*(*vecPsfFT_p[0])*(*vecScalesFT_p[scale]));
cWork_p->copyData(dpsExpr);
LatticeFFT::cfft2d(*cWork_p, False);
AlwaysAssert(matR_p[IND2(taylor,scale)], AipsError);
LatticeExpr<Float> realWork2(real(*cWork_p));
matR_p[IND2(taylor,scale)]->copyData(realWork2);
//String lab("_"+String::toString(taylor)+"_"+String::toString(scale));
}
}
return 0;
}/* end of computeRHS() */
/***************************************
* Compute flux limit for minor cycles
****************************************/
template <class T>
Int MultiTermLatticeCleaner<T>::computeFluxLimit(Float &fluxlimit, Float threshold)
{
LogIO os(LogOrigin("MultiTermLatticeCleaner", "computeFluxLimit", WHERE));
// Find max residual ( from all scale and taylor convos of the residual image )
// Find max ext PSF value ( from all scale convos of all the PSFs )
// factor = 0.01;
// fluxlimit = maxRes * maxExtPsf * factor;
/*
Float maxRes=0.0;
Float maxExtPsf=0.0;
Float tmax=0.0;
IPosition tmaxpos;
Float ffactor=0.01;
Int maxscale=0;
for(Int taylor=0;taylor<ntaylor_p;taylor++)
for(Int scale=0; scale<nscales_p;scale++)
{
findMaxAbsLattice((*mask_p),(*matR_p[IND2(taylor,scale)]),tmax,tmaxpos);
if(tmax > maxRes) maxscale = scale;
maxRes = MAX(maxRes,tmax);
cout << "MaxRes for taylor " << taylor << " and scale " << scale << " : " << maxRes << endl;
}
for (Int taylor1=0; taylor1<ntaylor_p;taylor1++)
for (Int taylor2=0; taylor2<=taylor1;taylor2++)
for (Int scale1=0; scale1<nscales_p;scale1++)
for (Int scale2=0; scale2<=scale1;scale2++)
{
findMaxAbsLattice((*mask_p),(*cubeA_p[IND4(taylor1,taylor2,scale1,scale2)]),tmax,tmaxpos, True);
maxExtPsf = MAX(maxExtPsf,tmax);
cout << "MaxExtPSF for taylor " << taylor1 << "," << taylor2 << " and scale " << scale1 << "," << scale2 << " : " << maxExtPsf << endl;
}
Float norma1 = sqrt((1.0/(*matA_p[maxscale])(0,0)));
fluxlimit = max(threshold, (maxRes*norma1) * ffactor);
os << "Max Residual : " << maxRes*norma1 << " FluxLimit : " << fluxlimit << LogIO::POST;
cout << "Old : Max Residual : " << maxRes*norma1 << " FluxLimit : " << fluxlimit << endl;
*/
Float maxres=0.0;
IPosition maxrespos;
findMaxAbsLattice((*mask_p),(*matR_p[IND2(0,0)]),maxres,maxrespos);
Float norma = (1.0/(*matA_p[0])(0,0));
Float rmaxval = maxres*norma;
fluxlimit = max(threshold, rmaxval/10.0);
os << "Max Residual : " << rmaxval << " Flux Limit for this major cycle : " << fluxlimit << endl;
return 0;
}/* end of computeFluxLimit() */
/***************************************
* Solve the matrix eqn for each point in the lattice.
****************************************/
template <class T>
Int MultiTermLatticeCleaner<T>::solveMatrixEqn(Int scale)
{
/* Solve for the coefficients */
for(Int taylor1=0;taylor1<ntaylor_p;taylor1++)
{
len_p = LatticeExprNode(0.0);
for(Int taylor2=0;taylor2<ntaylor_p;taylor2++)
{
len_p = len_p + LatticeExprNode((Float)(*invMatA_p[scale])(taylor1,taylor2)*(*matR_p[IND2(taylor2,scale)]));
}
(*matCoeffs_p[IND2(taylor1,scale)]).copyData(LatticeExpr<Float>(len_p));
}
return 0;
}/* end of solveMatrixEqn() */
/***************************************
* Compute the penalty function
****************************************/
template <class T>
Int MultiTermLatticeCleaner<T>::computePenaltyFunction(Int scale, Float &loopgain, Bool choosespec)
{
tWork_p->set(0.0);
for(Int i=0;i<(Int)itermatCoeffs_p.nelements();i++) itermatCoeffs_p[i]->reset();
for(Int i=0;i<(Int)itercubeA_p.nelements();i++) itercubeA_p[i]->reset();
for(Int i=0;i<(Int)itermatR_p.nelements();i++) itermatR_p[i]->reset();
for(itertWork_p->reset(); !(itertWork_p->atEnd()); (*itertWork_p)++)
{
if(choosespec)
{
for(Int taylor1=0;taylor1<ntaylor_p;taylor1++)
{
itertWork_p->rwCursor() += (Float)2.0*((itermatCoeffs_p[IND2(taylor1,scale)])->rwCursor())*((itermatR_p[IND2(taylor1,scale)])->rwCursor());
for(Int taylor2=0;taylor2<ntaylor_p;taylor2++)
itertWork_p->rwCursor() -= ((itermatCoeffs_p[IND2(taylor1,scale)])->rwCursor())*((itermatCoeffs_p[IND2(taylor2,scale)])->rwCursor())*((itercubeA_p[IND4(taylor1,taylor2,scale,scale)])->rwCursor());
}
// Constrain location too, based on the I0 flux being > thresh*5 or something..
}
else
{
if(loopgain > 0.5) loopgain*=0.5;
Float norm = sqrt((1.0/(*matA_p[scale])(0,0)));
itertWork_p->rwCursor() += norm*((itermatR_p[IND2(0,scale)])->rwCursor());
}
for(Int i=0;i<(Int)itermatCoeffs_p.nelements();i++) (*itermatCoeffs_p[i])++;
for(Int i=0;i<(Int)itercubeA_p.nelements();i++) (*itercubeA_p[i])++;
for(Int i=0;i<(Int)itermatR_p.nelements();i++) (*itermatR_p[i])++;
}
return 0;
}/* end of computePenaltyFunction() */
/***************************************
* Update the model images and the convolved residuals
****************************************/
template <class T>
Int MultiTermLatticeCleaner<T>::updateSolution(IPosition globalmaxpos, Int maxscaleindex, Float loopgain)
{
gip = IPosition(4,nx_p,ny_p,1,1);
IPosition support(4,nx_p/2,ny_p/2,0,0);
//IPosition psfpeak(support);
IPosition psfpeak(itsPositionPeakPsf);
globalmaxpos[2]=0;
globalmaxpos[3]=0;
/* Region for the inner quarter..... the update region. */
IPosition inc(4,1,1,0,0);
IPosition blc(psfpeak-support/2);
IPosition trc(psfpeak+support/2-IPosition(4,1,1,0,0));
LCBox::verify(blc, trc, inc, gip);
/* Shifted region, with the psf at the globalmaxpos. */
IPosition blcPsf(2*psfpeak-support/2-globalmaxpos);
IPosition trcPsf(2*psfpeak+support/2-globalmaxpos-IPosition(4,1,1,0,0));
LCBox::verify(blcPsf, trcPsf, inc, gip);
makeBoxesSameSize(blc,trc,blcPsf,trcPsf);
LCBox subRegion(blc,trc,gip);
LCBox subRegionPsf(blcPsf,trcPsf,gip);
/* Update the model image */
for(Int taylor=0;taylor<ntaylor_p;taylor++)
{
SubLattice<Float> modelSub(*vecModel_p[taylor],subRegion,True);
SubLattice<Float> scaleSub((*vecScales_p[maxscaleindex]),subRegionPsf,True);
addTo(modelSub,scaleSub,loopgain*(*matCoeffs_p[IND2(taylor,maxscaleindex)]).getAt(globalmaxpos));
}
/* Update the convolved residuals */
for(Int scale=0;scale<nscales_p;scale++)
for(Int taylor1=0;taylor1<ntaylor_p;taylor1++)
{
SubLattice<Float> residSub((*matR_p[IND2(taylor1,scale)]),subRegion,True);
for(Int taylor2=0;taylor2<ntaylor_p;taylor2++)
{
SubLattice<Float> smoothSub((*cubeA_p[IND4(taylor1,taylor2,scale,maxscaleindex)]),subRegionPsf,True);
addTo(residSub,smoothSub,-1*loopgain*(*matCoeffs_p[IND2(taylor2,maxscaleindex)]).getAt(globalmaxpos));
}
}
/* Update flux counters */
for(Int taylor=0;taylor<ntaylor_p;taylor++)
{
totalTaylorFlux_p[taylor] += loopgain*(*matCoeffs_p[IND2(taylor,maxscaleindex)]).getAt(globalmaxpos);
}
totalScaleFlux_p[maxscaleindex] += loopgain*(*matCoeffs_p[IND2(0,maxscaleindex)]).getAt(globalmaxpos);
return 0;
}/* end of updateSolution() */
/* ................ */
template <class T>
Int MultiTermLatticeCleaner<T>::checkConvergence(Bool choosespec, Float thresh, Float fluxlimit)
{
/* Calculate convergence thresholds..... */
Float rmaxval=0.0;
#if 0
/* Use the strongest I0 component, to compare against the convergence threshold */
Float compval = fabs((*matCoeffs_p[IND2(0,maxscaleindex)]).getAt(globalmaxpos));
//Float compval = fabs((*matCoeffs_p[IND2(0,maxscaleindex)]).getAt(globalmaxpos)) * (scaleSizes_p[maxscaleindex]+1);
rmaxval = MAX( rmaxval , compval );
#endif
#if 1
/* Use the maximum residual (current), to compare against the convergence threshold */
Float maxres=0.0;
IPosition maxrespos;
findMaxAbsLattice((*mask_p),(*matR_p[IND2(0,0)]),maxres,maxrespos);
Float norma = (1.0/(*matA_p[0])(0,0));
//rmaxval = MAX(rmaxval, maxres*norma/5.0);
rmaxval = maxres*norma;
#endif
/* Check for convergence */
/* Switch between penalty functions, after a I0 component lower than the threshold
is picked. Until then, pick components that minimize chi-sq. After switching,
pick components that correspond to the peak I0 residual */
Int convergedflag = 0;
// 0 : continue
// 1 : converged because of fluxlimit for this cycle
// 2 : converged because of threshold
// -1 : stopped because of iteration limit.
if( (fabs(rmaxval) < thresh) ){ convergedflag = 2;}
else
{
if( fabs(rmaxval) < fluxlimit ) { convergedflag=1; }
}
//if((fabs(rmaxval) < fluxlimit) || (fabs(rmaxval) < thresh*1.5 && !choosespec))
//{convergedflag=1;}
//else
//{
// if(fabs(rmaxval) < thresh*5.0 && choosespec)
// {convergedflag=0; choosespec=False; if(adbg)os << "Switching stopping criterion" << LogIO::POST;}
//}
/* Stop, if there are negatives on the largest scale in the Io image */
//if(nscales_p>1 && maxscaleindex == nscales_p-2)
// if((*matCoeffs_p[IND2(0,maxscaleindex)]).getAt(globalmaxpos) < 0.0)
// {converged = False;break;}
return convergedflag;
}/* end of checkConvergence */
/*************************************
* Find the max and position
* - restrict this to within the inner quarter.
*************************************/
template <class T>
Bool MultiTermLatticeCleaner<T>::findMaxAbsLattice(const TempLattice<Float>& masklat,const Lattice<Float>& lattice,Float& maxAbs,IPosition& posMaxAbs, Bool flip)
{
AlwaysAssert(masklat.shape()==lattice.shape(), AipsError);
Array<Float> msk;
posMaxAbs = IPosition(lattice.shape().nelements(), 0);
maxAbs=0.0;
//maxAbs=-1.0e+10;
const IPosition tileShape = lattice.niceCursorShape();
TiledLineStepper ls(lattice.shape(), tileShape, 0);
TiledLineStepper lsm(masklat.shape(), tileShape, 0);
{
RO_LatticeIterator<Float> li(lattice, ls);
RO_LatticeIterator<Float> lim(masklat, lsm);
for(li.reset(),lim.reset();!li.atEnd();li++,lim++)
{
IPosition posMax=li.position();
IPosition posMin=li.position();
Float maxVal=0.0;
Float minVal=0.0;
msk = lim.cursor();
if(flip) msk = (Float)1.0 - msk;
//minMaxMasked(minVal, maxVal, posMin, posMax, li.cursor(),lim.cursor());
minMaxMasked(minVal, maxVal, posMin, posMax, li.cursor(),msk);
if((maxVal)>(maxAbs))
{
maxAbs=maxVal;
posMaxAbs=li.position();
posMaxAbs(0)=posMax(0);
}
}
}
return True;
}
} //# NAMESPACE CASACORE - END
#endif
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