This file is indexed.

/usr/include/coin/CglKnapsackCover.hpp is in coinor-libcgl-dev 0.58.9-1+b1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
// $Id: CglKnapsackCover.hpp 1123 2013-04-06 20:47:24Z stefan $
// Copyright (C) 2000, International Business Machines
// Corporation and others.  All Rights Reserved.
// This code is licensed under the terms of the Eclipse Public License (EPL).

#ifndef CglKnapsackCover_H
#define CglKnapsackCover_H

#include <string>

#include "CglCutGenerator.hpp"
#include "CglTreeInfo.hpp"

/** Knapsack Cover Cut Generator Class */
class CglKnapsackCover : public CglCutGenerator {
   friend void CglKnapsackCoverUnitTest(const OsiSolverInterface * siP,
					const std::string mpdDir );

public:
   /** A method to set which rows should be tested for knapsack covers */
   void setTestedRowIndices(int num, const int* ind);

   /**@name Generate Cuts */
  //@{
  /** Generate knapsack cover cuts for the model of the solver interface, si. 
      Insert the generated cuts into OsiCut, cs.
  */
  virtual void generateCuts(const OsiSolverInterface & si, OsiCuts & cs,
			    const CglTreeInfo info = CglTreeInfo());
  //@}

  /**@name Constructors and destructors */
  //@{
  /// Default constructor 
  CglKnapsackCover ();
 
  /// Copy constructor 
  CglKnapsackCover (
    const CglKnapsackCover &);

  /// Clone
  virtual CglCutGenerator * clone() const;

  /// Assignment operator 
  CglKnapsackCover &
    operator=(
    const CglKnapsackCover& rhs);
  
  /// Destructor 
  virtual
    ~CglKnapsackCover ();
  /// Create C++ lines to get to current state
  virtual std::string generateCpp( FILE * fp);
  /// This can be used to refresh any information
  virtual void refreshSolver(OsiSolverInterface * solver);
  //@}


  /**@name Sets and gets */
  //@{
  /// Set limit on number in knapsack
  inline void setMaxInKnapsack(int value)
           { if (value>0) maxInKnapsack_ = value;}
  /// get limit on number in knapsack
  inline int getMaxInKnapsack() const
           {return maxInKnapsack_;}
  /// Switch off expensive cuts
  inline void switchOffExpensive()
  { expensiveCuts_=false;}
  /// Switch on expensive cuts
  inline void switchOnExpensive()
  { expensiveCuts_=true;}
private:
  
 // Private member methods


  /**@name Private methods */
  //@{

  /** deriveAKnapsack 
                 returns 1 if it is able to derive
                 a (canonical) knapsack inequality
                in binary variables of the form ax<=b 
                 from the rowIndex-th  row in the model, 
                returns 0 otherwise.
  */
  int deriveAKnapsack(
    const OsiSolverInterface & si, 
    OsiCuts & cs,
    CoinPackedVector & krow,
    bool treatAsLRow,
    double & b,
    int *  complement,
    double *  xstar,
    int rowIndex,
    int numberElements,
    const int * index,
    const double * element);

  int deriveAKnapsack(
    const OsiSolverInterface & si, 
    OsiCuts & cs,
    CoinPackedVector & krow,
    double & b,
    int *  complement,
    double *  xstar,
    int rowIndex,
    const CoinPackedVectorBase & matrixRow);

  /** Find a violated minimal cover from 
 a canonical form knapsack inequality by
 solving the -most- violated cover problem
 and postprocess to ensure minimality
  */
  int findExactMostViolatedMinCover(
      int nCols, 
      int row,
      CoinPackedVector & krow,
      double b, 
      double *  xstar, 
      CoinPackedVector & cover,
      CoinPackedVector & remainder);

  /** Find the most violate minimum cover by solving the lp-relaxation of the
      most-violate-min-cover problem 
  */
  int findLPMostViolatedMinCover(
      int nCols,
      int row,
      CoinPackedVector & krow,
      double & b,
      double * xstar, 
      CoinPackedVector & cover,
      CoinPackedVector & remainder);
  
/// find a minimum cover by a simple greedy approach
  int findGreedyCover(
      int row,
      CoinPackedVector & krow,
      double & b,
      double * xstar,
      CoinPackedVector & cover,
      CoinPackedVector & remainder
      );

  /// lift the cover inequality
  int liftCoverCut(
     double & b,
     int nRowElem,
     CoinPackedVector & cover,
     CoinPackedVector & remainder,
     CoinPackedVector & cut );
 
  /// sequence-independent lift and uncomplement and add the resulting cut to the cut set
  int liftAndUncomplementAndAdd(
     double rowub,
     CoinPackedVector & krow,
     double & b,
     int * complement,
     int row,
     CoinPackedVector & cover,
     CoinPackedVector & remainder,
     OsiCuts & cs );

  /// sequence-dependent lift, uncomplement and add the resulting cut to the cut set
void seqLiftAndUncomplementAndAdd(
      int nCols,
      double * xstar, 
      int * complement,
      int row,
      int nRowElem,
      double & b,
      CoinPackedVector & cover,      // need not be violated
      CoinPackedVector & remainder,
      OsiCuts & cs );

  /// sequence-dependent lift binary variables either up or down, uncomplement and add to the cut set
void liftUpDownAndUncomplementAndAdd(
         int nCols,
         double * xstar, 
         int * complement,
         int row,
         int nRowElem,
         double & b,

         // the following 3 packed vectors partition the krow:
         CoinPackedVector & fracCover, // vars have frac soln values in lp relaxation
                                       // and form cover with the vars atOne
         CoinPackedVector & atOne,     // vars have soln value of 1 in lp relaxation
                                       // and together with fracCover form minimal (?) cover. 
         CoinPackedVector & remainder,
         OsiCuts & cs );

  /// find a cover using a variation of the logic found in OSL (w/o SOS)
  int findPseudoJohnAndEllisCover (
     int row,
     CoinPackedVector & krow,
     double & b,
     double * xstar,                     
     CoinPackedVector & cover,  
     CoinPackedVector & remainder);

  /// find a cover using the basic logic found in OSL (w/o SOS)
  int findJohnAndEllisCover (
     int row,
     CoinPackedVector & krow,
     double & b,
     double * xstar,                     
     CoinPackedVector & fracCover,  
     CoinPackedVector & atOnes,  
     CoinPackedVector & remainder);


  /** A C-style implementation of the Horowitz-Sahni exact solution 
   procedure for solving knapsack problem. 
   
   (ToDo: implement the more efficient dynamic programming approach)

   (Reference: Martello and Toth, Knapsack Problems, Wiley, 1990, p30.)
  */
  int exactSolveKnapsack(
      int n, 
      double c, 
      double const *pp, 
      double const *ww,
      double & z, 
      int * x);

  /** Creates cliques for use by probing.
      Only cliques >= minimumSize and < maximumSize created
      Can also try and extend cliques as a result of probing (root node).
      Returns number of cliques found.
  */
  int createCliques( OsiSolverInterface & si, 
		    int minimumSize=2, int maximumSize=100, bool extendCliques=false);
  /// Delete all clique information
  void deleteCliques();
  //@}

  // Private member data

  /**@name Private member data */
  //@{
  /// epsilon
  double epsilon_;  
  /// Tolerance to use for violation - bigger than epsilon_
  double epsilon2_;
  /// 1-epsilon
  double onetol_;  
  /// Maximum in knapsack
  int maxInKnapsack_;
  /** which rows to look at. If specified, only these rows will be considered
      for generating knapsack covers. Otherwise all rows will be tried */
  int numRowsToCheck_;
  int* rowsToCheck_;
  /// exactKnapsack can be expensive - this switches off some
  bool expensiveCuts_;
  /// Cliques
  /// **** TEMP so can reference from listing
  const OsiSolverInterface * solver_;
  int whichRow_;
  int * complement_;
  double * elements_;
  /// Number of cliques
  int numberCliques_;
  /// Clique type
  typedef struct {
    unsigned int equality:1; //  nonzero if clique is ==
  } cliqueType;
  cliqueType * cliqueType_;
  /// Start of each clique
  int * cliqueStart_;
  /// Entries for clique
  cliqueEntry * cliqueEntry_;
  /** Start of oneFixes cliques for a column in matrix or -1 if not
      in any clique */
  int * oneFixStart_;
  /** Start of zeroFixes cliques for a column in matrix or -1 if not
      in any clique */
  int * zeroFixStart_;
  /// End of fixes for a column
  int * endFixStart_;
  /// Clique numbers for one or zero fixes
  int * whichClique_;
  /// Number of columns
  int numberColumns_;
  /** For each column with nonzero in row copy this gives a clique "number".
      So first clique mentioned in row is always 0.  If no entries for row
      then no cliques.  If sequence > numberColumns then not in clique.
  */
  //cliqueEntry * cliqueRow_;
  /// cliqueRow_ starts for each row
  //int * cliqueRowStart_;
  //@}
};

//#############################################################################
/** A function that tests the methods in the CglKnapsackCover class. The
    only reason for it not to be a member method is that this way it doesn't
    have to be compiled into the library. And that's a gain, because the
    library should be compiled with optimization on, but this method should be
    compiled with debugging. */
void CglKnapsackCoverUnitTest(const OsiSolverInterface * siP,
			      const std::string mpdDir );
  
#endif