/usr/lib/emboss/include/ajfeatwrite.h is in emboss-lib 6.6.0+dfsg-6.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 | /* @include ajfeatwrite *******************************************************
**
** AJAX feature writing functions
**
** These functions control all aspects of AJAX feature writing
**
** @author Copyright (C) 1999 Richard Bruskiewich
** @modified 2000 Ian Longden.
** @modified 2001-2011 Peter Rice.
** @version $Revision: 1.6 $
** @modified $Date: 2011/12/19 16:39:37 $ by $Author: rice $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef AJFEATWRITE_H
#define AJFEATWRITE_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ajdefine.h"
#include "ajstr.h"
#include "ajfile.h"
#include "ajfeatdata.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
AjBool ajFeatOutFormatDefault(AjPStr* pformat);
void ajFeatoutPrintFormat(AjPFile outf, AjBool full);
void ajFeatoutPrinthtmlFormat(AjPFile outf);
void ajFeatoutPrintbookFormat(AjPFile outf);
void ajFeatoutPrintwikiFormat(AjPFile outf);
void ajFeatwriteExit(void);
AjBool ajFeattableWriteDebug(AjPFeattabOut ftout,
const AjPFeattable ftable);
AjBool ajFeattablePrint(const AjPFeattable ftable,
AjPFile file);
AjBool ajFeattableWriteBed(AjPFeattabOut ftout,
const AjPFeattable features);
AjBool ajFeattableWriteDasgff(AjPFeattabOut ftout,
const AjPFeattable features);
AjBool ajFeattableWriteDdbj(AjPFeattabOut ftout,
const AjPFeattable features);
AjBool ajFeattableWriteDraw(AjPFeattabOut ftout,
const AjPFeattable thys);
AjBool ajFeattableWriteEmbl(AjPFeattabOut ftout,
const AjPFeattable features);
AjBool ajFeattableWriteGenbank(AjPFeattabOut ftout,
const AjPFeattable features);
AjBool ajFeattableWriteRefseq(AjPFeattabOut ftout,
const AjPFeattable features);
AjBool ajFeattableWriteRefseqp(AjPFeattabOut ftout,
const AjPFeattable features);
AjBool ajFeattableWriteGff2(AjPFeattabOut ftout,
const AjPFeattable features);
AjBool ajFeattableWriteGff3(AjPFeattabOut ftout,
const AjPFeattable features);
AjBool ajFeattableWritePir(AjPFeattabOut ftout,
const AjPFeattable features);
AjBool ajFeattableWriteSwiss(AjPFeattabOut ftout,
const AjPFeattable features);
void ajFeattabOutClear(AjPFeattabOut *thys);
void ajFeattabOutDel(AjPFeattabOut* pthis);
AjPFile ajFeattabOutFile(const AjPFeattabOut thys);
AjPStr ajFeattabOutFilename(const AjPFeattabOut thys);
AjBool ajFeattabOutIsLocal(const AjPFeattabOut thys);
AjBool ajFeattabOutIsOpen(const AjPFeattabOut thys);
AjPFeattabOut ajFeattabOutNew(void);
AjPFeattabOut ajFeattabOutNewCSF(const char* fmt, const AjPStr name,
const char* type, AjPFile buff);
AjPFeattabOut ajFeattabOutNewSSF(const AjPStr fmt, const AjPStr name,
const char* type, AjPFile buff);
AjBool ajFeattabOutOpen(AjPFeattabOut thys, const AjPStr ufo);
AjBool ajFeattabOutSet(AjPFeattabOut thys, const AjPStr ufo);
void ajFeattabOutSetBasename(AjPFeattabOut thys,
const AjPStr basename);
AjBool ajFeattabOutSetSeqname(AjPFeattabOut thys, const AjPStr name);
AjBool ajFeattabOutSetType(AjPFeattabOut thys, const AjPStr type);
AjBool ajFeattabOutSetTypeC(AjPFeattabOut thys, const char* type);
AjBool ajFeattableWriteUfo(AjPFeattabOut ftout, const AjPFeattable ft,
const AjPStr Ufo);
AjBool ajFeattableWrite(AjPFeattabOut ftout, const AjPFeattable ft);
/*
** End of prototype definitions
*/
#ifdef AJ_COMPILE_DEPRECATED_BOOK
#endif /* AJ_COMPILE_DEPRECATED_BOOK */
#ifdef AJ_COMPILE_DEPRECATED
__deprecated AjBool ajFeatUfoWrite(const AjPFeattable thys,
AjPFeattabOut featout,
const AjPStr ufo);
__deprecated AjBool ajFeatWrite(AjPFeattabOut ftout,
const AjPFeattable features);
#endif /* AJ_COMPILE_DEPRECATED */
AJ_END_DECLS
#endif /* AJFEATWRITE_H */
|