This file is indexed.

/usr/lib/emboss/include/ajreg.h is in emboss-lib 6.6.0+dfsg-6.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
/* @include ajreg *************************************************************
**
** AJAX REG (ajax regular expression) functions
**
** Uses the Perl-Comparible Regular Expressions Library (PCRE)
** included as a sepoarate library in the EMBOSS distribution.
**
** @author Copyright (C) 1998 Peter Rice
** @version $Revision: 1.24 $
** @modified Jun 25 pmr First version
** @modified 1999-2011 pmr Replace Henry Spencer library with PCRE
** @modified $Date: 2011/10/18 14:23:40 $ by $Author: rice $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA  02110-1301,  USA.
**
******************************************************************************/

#ifndef AJREG_H
#define AJREG_H

/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */

#include "ajdefine.h"
#include "ajstr.h"

#include "pcre_config.h"
#include "pcre_internal.h"
#include "pcreposix.h"

AJ_BEGIN_DECLS




/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */




#define AJREG_OVECSIZE 30




/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */




/* @data AjPRegexp ************************************************************
**
** PCRE expression internals, wrapped for AJAX calls
**
** @alias AjSRegexp
** @alias AjORegexp
**
** @attr pcre [real_pcre*] PCRE compiled expression
** @attr extra [pcre_extra*] PCRE study data (if available, else NULL)
** @attr ovector [int*] Output vector offsets
** @attr orig [const char*] Original string
** @attr ovecsize [int] Output vector size
** @attr matches [int] Number of matches
******************************************************************************/

typedef struct AjSRegexp
{
    real_pcre *pcre;
    pcre_extra *extra;
    int *ovector;
    const char* orig;
    int ovecsize;
    int matches;
} AjORegexp;

#define AjPRegexp AjORegexp*




/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */




/*
** Prototype definitions
*/

/* constructors */

AjPRegexp ajRegComp(const AjPStr rexp);
AjPRegexp ajRegCompC(const char* rexp);

AjPRegexp ajRegCompCase(const AjPStr rexp);
AjPRegexp ajRegCompCaseC(const char* rexp);

/* execute expression match */

AjBool ajRegExec(AjPRegexp prog, const AjPStr str);
AjBool ajRegExecC(AjPRegexp prog, const char* str);

AjBool ajRegExecall(AjPRegexp prog, const AjPStr str);
AjBool ajRegExecallC(AjPRegexp prog, const char* str);

/* test substrings */

ajint  ajRegGetMatches(const AjPRegexp rp);
ajint  ajRegLenI(const AjPRegexp rp, ajint isub);
ajint  ajRegOffset(const AjPRegexp rp);
ajint  ajRegOffsetI(const AjPRegexp rp, ajint isub);

/* get substrings */

AjBool ajRegPre(const AjPRegexp rp, AjPStr* dest);
AjBool ajRegPost(const AjPRegexp rp, AjPStr* post);
AjBool ajRegPostC(const AjPRegexp rp, const char** post);
AjBool ajRegSubI(const AjPRegexp rp, ajint isub, AjPStr* dest);

/* destructor */

void   ajRegFree(AjPRegexp* pexp);
void   ajRegTrace(const AjPRegexp rexp);

void   ajRegExit(void);

/*
** End of prototype definitions
*/




AJ_END_DECLS

#endif /* !AJREG_H */