/usr/bin/qstatus is in gridengine-client 8.1.9+dfsg-4+deb9u2.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
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#
# qstatus will reformat the output of the qstat command by SGE.
#
# Version 1.0 - 2004-08-23 Initial release
# This version supports SGE 5.x and 6.x
#
# Version 1.1 - 2005-09-06 Small update to shorten too long
# jobnames in the middle, giving the
# ability to see the last part of it
#
# Version 1.2 - 2006-02-10 Correction of some typos
#
# Version 1.3 - 2009-07-20 (Internal release with colored output by
# group. Not in the official release,
# available on request.)
#
# Version 1.4 - 2009-08-10 Switch -r to display relative dates.
# Idea by Harvey Richardson.
#
# Version 1.5 - 2010-11-30 Switch -t to display array tasks.
# Idea by Kristof Lebecki.
# Machinename limited to short hostname.
#
# Version 1.5a- 2012-04-13 Removed [] suffix for non-array jobs if
# -t was requested by the user.
#
# Version 1.6 - 2012-04-25 Rename to avoid clash with upstart and
# fix for sge 8 and RedHat 5.
# Dave Love
#
# Copyright (C) 2010 Reuti, email: reuti@staff.uni-marburg.de
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
PGM_NAME="qstatus"
PGM_VERSION="1.6"
#
# If there is an unrecoverable error: display a message and exit.
#
function printExit
{
case $1 in
[iI]) echo INFO: "$2" >&2 ;;
[wW]) echo WARNING: "$2" >&2 ;;
[eE]) echo ERROR: "$2" ; exit 1 >&2 ;;
*) echo $1 >&2 ;;
esac
}
#
# System dependent setups.
#
platform=`uname -s`
case $platform in
SunOS) awk_command=/usr/xpg4/bin/awk ;;
*) awk_command=awk ;;
esac
awk_path=`which $awk_command`
if [ ! -r "$awk_path" -o ! -x "$awk_path" ] ; then
printExit W "No executable awk program found."
printExit E "Please update the path to awk in \"status\" according to your installation."
fi
#
# First define some functions.
#
function usage
{
cat <<-EOF
$PGM_NAME $PGM_VERSION
Usage: $PGM_NAME [-acghjlmnort] [-s SORT_FIELD_LIST] [USER]
See \`man $PGM_NAME' for more information.
EOF
exit 2
}
#
# Analyze the given parameters to the command.
#
while getopts :acghjlmnors:t options ; do
case $options in
a) CMDOPT_A="1" ;;
c) CMDOPT_C="1" ;;
g) CMDOPT_G="1" ;;
h) usage ;;
j) CMDOPT_J="1" ;;
l) CMDOPT_L="1" ;;
m) CMDOPT_M="1" ;;
n) CMDOPT_N="1"
unset CMDOPT_O ;;
o) CMDOPT_O="1"
unset CMDOPT_N ;;
r) CMDOPT_R="1" ;;
s) CMDOPT_S="1"
sort_request="$OPTARG" ;;
t) CMDOPT_T="1" ;;
\?) printExit E "Invalid option: -$OPTARG." ;;
esac
done
#
# Shift the arguments up to the input without the option prefix "-".
# This should be the user name.
#
shift $((OPTIND-1))
#
# Test, whether was a user specified.
#
if [ -n "$CMDOPT_A" ] ; then
if [ -n "$1" ] ; then
printExit E "You may only specify -a *or* an user, but not both."
else
myuser="*"
listuser="1"
fi
else
if [ -n "$1" ] ; then
myuser="$1"
else
myuser="$USER"
fi
fi
#
# Range of selected jobs to be included.
#
if [ -n "$CMDOPT_J" ] ; then
jobrange="rs"
else
jobrange="r"
fi
#
# Decide, whether the owner should be included in the output.
#
if [ -n "$CMDOPT_N" ] ; then
unset listuser
fi
if [ -n "$CMDOPT_O" ] ; then
listuser="1"
fi
#
# Grouping of owner requested?
#
if [ -n "$CMDOPT_G" -a -z "$listuser" ] ; then
printExit E "Option -g not applicable, without listing the owner of the jobs."
fi
#
# Get the version of the installed SGE.
#
version=`qstat -help 2>&1 | head -1 | cut -f 2 -d " "`
case $version in
5*) qstat_running='qstat -u "${myuser:-*}" -s "$jobrange" -r'
qstat_waiting='qstat -u "${myuser:-*}" -g d -s p -r'
running_in_column="all"
;;
6*|8*) qstat_running='qstat -u "${myuser:-*}" -g t -s "$jobrange" -r'
qstat_waiting='qstat -u "${myuser:-*}" -g d -s p -r'
if [ -n "$CMDOPT_M" ] ; then
running_in_column="machine"
else
running_in_column="queue"
fi
;;
*) printExit E "This version of SGE ($version) is not supported."
;;
esac
#
# Assemble the sort commands as requested.
#
if [ -n "$CMDOPT_G" ] ; then
if [ -n "$CMDOPT_S" ] ; then
printExit E "You can't use the -g (grouped) switch together with the -s (sort) option."
else
sort_request="owner,running"
fi
else
if [ -z "$CMDOPT_S" ] ; then
sort_request="running"
fi
fi
sort_command=`$awk_command -v sort_request="$sort_request" -v listuser="$listuser" '
BEGIN { field_position["job"]=" -k 1,1"
field_position["name"]=" -k 3,3"
field_position["slots"]=" -k 2,2"
if (listuser)
{
field_position["owner"]=" -k 4,4"
field_position["running"]=" -k 7,7"
field_position["time"]=" -k 5,5 -k 6,6"
}
else
{
field_position["running"]=" -k 6,6"
field_position["time"]=" -k 4,4 -k 5,5"
}
sort_count=split(sort_request, sort_fields, ",")
for (field=1; field<=sort_count; field++)
{
if (sort_fields[field]=="none")
{
sort_command_running=""
sort_command_waiting=""
if (sort_count>1)
{ printf "WARNING: Sort set to none, supersede all other column names given.\n" > "/dev/stderr" }
break
}
if (sort_fields[field]=="owner" && ! listuser)
{
printf "WARNING: Sort by owner ignored, because owner not displayed.\n" > "/dev/stderr"
continue
}
if (field_position[sort_fields[field]]=="")
{ printf "WARNING: Sort column name \""sort_fields[field]"\" ignored.\n" > "/dev/stderr" }
else
{
sort_command_running=sort_command_running field_position[sort_fields[field]]
if (sort_fields[field] != "running")
{ sort_command_waiting=sort_command_waiting field_position[sort_fields[field]] }
}
}
if (sort_command_running)
{ sort_command_running="sort -b " sort_command_running }
else
{ sort_command_running="cat" }
if (sort_command_waiting)
{ sort_command_waiting="sort -b " sort_command_waiting }
else
{ sort_command_waiting="cat" }
print sort_command_running"|"sort_command_waiting } '`
sort_command_running=${sort_command%|*}
sort_command_waiting=${sort_command#*|}
# Used with strftime to get UTC. Is there a better semi-portable way?
SGE_ARCH=`$SGE_ROOT/util/arch`
utc_offset=`$SGE_ROOT/utilbin/$SGE_ARCH/now -utcoffset`
#
# Now do it.
#
#
# First the already running jobs.
#
eval $qstat_running | $awk_command -v utc_offset=$utc_offset '
BEGIN { firstrun=1
ignore=0
# actual_time=systime() # not portable
cmd="perl -e \"print time();\""
cmd | getline
actual_time=$1
close(cmd)
}
function printy()
{
strlen=length(jobname)
if ( strlen > 25)
{ newjobname=substr(jobname,1,11)"..."substr(jobname,strlen-10) }
else
{ newjobname=substr(jobname,1,25) }
if (listuser)
{
printf("%7s %2d %-25s %-10s %19s %-10s %s\n",
jobid, procs, newjobname,
length(owner)>10 ? substr(owner,1,9) ">" : owner,
starttime, masternode, ext) | sort_command
}
else
{
printf("%7s %2d %-25s %19s %-10s %s\n",
jobid, procs, newjobname, starttime, masternode, ext) | sort_command
}
}
/MASTER *[0-9]*$/ { if (firstrun)
{
if (listing)
{
if (listuser)
{
printf "Running jobs:\n"
printf " job-ID # name owner start time running in\n"
printf "------------------------------------------------------------------------------\n"
}
else
{
printf "Running jobs for user: %s\n", user
printf " job-ID # name start time running in\n"
printf "-------------------------------------------------------------------\n"
}
}
firstrun=0
}
else
{
if (listing)
{ printy() }
}
ignore=0
jobid=$1
owner=$4
procs=1
starttime=$6" "$7
task=$10
if (relative)
{
running_seconds=actual_time - mktime(substr($6,7,4)" "substr($6,1,2)" "substr($6,4,2)" " \
substr($7,1,2)" "substr($7,4,2)" "substr($7,7,2))
starttime_days=int(running_seconds / 86400)
starttime_time=strftime("%T", (running_seconds % 86400) - utc_offset)
starttime=sprintf("-%dd %s", starttime_days, starttime_time)
}
if (running_in_column=="all")
{ masternode=$8 }
else if (running_in_column=="machine")
{
masternode=substr($8, index($8, "@")+1)
hostname_separator=index(masternode, ".")
if (hostname_separator)
{ masternode=substr(masternode, 1, hostname_separator-1) }
}
else if (running_in_column=="queue")
{ masternode=substr($8, 1, index($8, "@")-1) }
else
{ masternode="Unknown" }
ext=match($5, "d") ? "stalled" : ""
if (match($5, "s"))
{
if (ext)
{ ext=ext", suspended" }
else
{ ext="suspended"}
}
if (match($5, "S"))
{
if (ext)
{ ext=ext", suspended by queue" }
else
{ ext="suspended by queue"}
}
if (ext)
{ ext="("ext")" }
if (listuser)
{
serial[owner]++
parallel[owner]+=0
serial_slots[owner]++
parallel_slots[owner]+=0
}
else
{
serial[user]++
parallel[user]+=0
serial_slots[user]++
parallel_slots[user]+=0
}
}
/SLAVE *[0-9]*$/ { ignore=1 }
ignore { next }
/^ *Full jobname:/ {
jobname=$3
if (display_task && task != "")
{ jobname=jobname"["task"]" }
}
/^ *Granted PE:/ { procs=$4
if (listuser)
{
serial[owner]--
parallel[owner]++
serial_slots[owner]--
parallel_slots[owner]+=procs
}
else
{
serial[user]--
parallel[user]++
serial_slots[user]--
parallel_slots[user]+=procs
}
}
END { if (! firstrun)
{
if (listing)
{
printy()
close(sort_command)
print ""
}
if (statistic)
{
printf("\n")
printf(" running #jobs/#slots\n")
printf("Owner serial parallel total\n")
printf("---------------------------------------\n")
if (listuser)
{
user_sort="sort -k 1,1"
for (owner in serial)
{
total_serial+=serial[owner]
total_parallel+=parallel[owner]
total_serial_slots+=serial_slots[owner]
total_parallel_slots+=parallel_slots[owner]
printf("%-10s %3d/%3d %3d/%3d %3d/%3d\n",
length(owner)>10 ? substr(owner,1,9) ">" : owner,
serial[owner], serial_slots[owner], parallel[owner], parallel_slots[owner],
serial[owner]+parallel[owner], serial_slots[owner]+parallel_slots[owner]) | user_sort
}
close(user_sort)
printf("---------------------------------------\n")
printf("Sum %3d/%3d %3d/%3d %3d/%3d\n",
total_serial, total_serial_slots, total_parallel, total_parallel_slots,
total_serial+total_parallel, total_serial_slots+total_parallel_slots)
}
else
{
printf("%-10s %3d/%3d %3d/%3d %3d/%3d\n",
length(user)>10 ? substr(user,1,9) ">" : user,
serial[user], serial_slots[user], parallel[user], parallel_slots[user],
serial[user]+parallel[user], serial_slots[user]+parallel_slots[user])
}
print ""
}
}
} ' user="$myuser" statistic="$CMDOPT_C" running_in_column="$running_in_column" \
listuser="$listuser" sort_command="$sort_command_running" listing="$((1-${CMDOPT_L:-0}))" \
relative="$CMDOPT_R" display_task="$CMDOPT_T"
#
# Now the waiting jobs.
#
eval $qstat_waiting | $awk_command -v utc_offset=$utc_offset '
BEGIN { firstrun=1
# actual_time=systime() # not portable
cmd="perl -e \"print time();\""
cmd | getline
actual_time=$1
close(cmd)
}
function printy()
{
strlen=length(jobname)
if ( strlen > 25)
{ newjobname=substr(jobname,1,11)"..."substr(jobname,strlen-10) }
else
{ newjobname=substr(jobname,1,25) }
if (listuser)
{
printf("%7s %2d %-25s %-10s %19s %s\n",
jobid, procs, newjobname,
length(owner)>10 ? substr(owner,1,9) ">" : owner,
submittime, ext) | sort_command
}
else
{
printf("%7s %2d %-25s %19s %s\n",
jobid, procs, newjobname, submittime, ext) | sort_command
}
}
/^ *[0-9]+ */ { if (firstrun)
{
if (listing)
{
if (listuser)
{
printf "Waiting jobs:\n"
printf " job-ID # name owner submit time \n"
printf "-------------------------------------------------------------------\n"
}
else
{
printf "Waiting jobs for user: %s\n", user
printf " job-ID # name submit time \n"
printf "--------------------------------------------------------\n"
}
}
firstrun=0
}
else
{
if (listing)
{ printy() }
}
jobid=$1
owner=$4
procs=1
submittime=$6" "$7
task=$9
if (relative)
{
waiting_seconds=actual_time - mktime(substr($6,7,4)" "substr($6,1,2)" "substr($6,4,2)" " \
substr($7,1,2)" "substr($7,4,2)" "substr($7,7,2))
submittime_days=int(waiting_seconds / 86400)
submittime_time=strftime("%T", (waiting_seconds % 86400) - utc_offset)
submittime=sprintf("-%dd %s", submittime_days, submittime_time)
}
ext=match($5, "E") ? "Error" : ""
if (match($5, "h"))
{
if (ext)
{ ext=ext", hold" }
else
{ ext="hold"}
}
if (ext)
{ ext="("ext")" }
if (listuser)
{
serial[owner]++
parallel[owner]+=0
serial_slots[owner]++
parallel_slots[owner]+=0
}
else
{
serial[user]++
parallel[user]+=0
serial_slots[user]++
parallel_slots[user]+=0
}
}
/^ *Full jobname:/ {
jobname=$3
if (display_task && task != "")
{ jobname=jobname"["task"]" }
}
/^ *Requested PE:/ { procs=$4
if (listuser)
{
serial[owner]--
parallel[owner]++
serial_slots[owner]--
parallel_slots[owner]+=procs
}
else
{
serial[user]--
parallel[user]++
serial_slots[user]--
parallel_slots[user]+=procs
}
}
END { if (! firstrun)
{
if (listing)
{
printy()
close(sort_command)
print ""
}
if (statistic)
{
printf("\n")
printf(" waiting #jobs/#slots\n")
printf("Owner serial parallel total\n")
printf("---------------------------------------\n")
if (listuser)
{
user_sort="sort -k 1,1"
for (owner in serial)
{
total_serial+=serial[owner]
total_parallel+=parallel[owner]
total_serial_slots+=serial_slots[owner]
total_parallel_slots+=parallel_slots[owner]
printf("%-10s %3d/%3d %3d/%3d %3d/%3d\n",
length(owner)>10 ? substr(owner,1,9) ">" : owner,
serial[owner], serial_slots[owner], parallel[owner], parallel_slots[owner],
serial[owner]+parallel[owner], serial_slots[owner]+parallel_slots[owner]) | user_sort
}
close(user_sort)
printf("---------------------------------------\n")
printf("Sum %3d/%3d %3d/%3d %3d/%3d\n",
total_serial, total_serial_slots, total_parallel, total_parallel_slots,
total_serial+total_parallel, total_serial_slots+total_parallel_slots)
}
else
{
printf("%-10s %3d/%3d %3d/%3d %3d/%3d\n",
length(user)>10 ? substr(user,1,9) ">" : user,
serial[user], serial_slots[user], parallel[user], parallel_slots[user],
serial[user]+parallel[user], serial_slots[user]+parallel_slots[user])
}
print ""
}
}
} ' user="$myuser" statistic="$CMDOPT_C" \
listuser="$listuser" sort_command="$sort_command_waiting" listing="$((1-${CMDOPT_L:-0}))" \
relative="$CMDOPT_R" display_task="$CMDOPT_T"
#
# So, that's all
#
exit 0
|