/usr/include/BALL/DOCKING/GENETICDOCK/geneticIndividual.h is in libball1.4-dev 1.4.3~beta1-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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// $Maintainer: Marcel Schumann $
// $Authors: Jan Fuhrmann, Marcel Schumann $
// ----------------------------------------------------
#ifndef BALL_DOCKING_GENETICDOCK_GENETICINDIVIDUAL_H
#define BALL_DOCKING_GENETICDOCK_GENETICINDIVIDUAL_H
#include <vector>
#include <BALL/DOCKING/GENETICDOCK/genes.h>
namespace BALL
{
class BALL_EXPORT GeneticIndividual
{
public:
/** standard constructor
*/
GeneticIndividual();
/** copy constructor
*/
GeneticIndividual(const GeneticIndividual& gi);
/** assigment operator
*/
GeneticIndividual& operator = (const GeneticIndividual& gi);
/** destructor
*/
~GeneticIndividual();
/** smaller operator regarding fitness score
*/
bool operator<(const GeneticIndividual& gi) const;
/** assigns fitness score
*/
void setFitnessValue(const double& d);
/** get fitness score
*/
double getFitnessValue();
/** assigns value to altered_
*/
void setAltered(bool b);
/** true if individual has changed since the last computation of the fitness score
*/
bool isAltered();
/** counts number of genes
*/
Size numberOfGenes();
/** get i-th gene
*/
GenericGene* getGene(const Size& i);
/** push back gene gg
*/
void insert(GenericGene* gg);
/** mate two individuals
*/
void mate(GeneticIndividual& parent, GeneticIndividual& offspring);
/** true if indiviual has been mutated
*/
bool isMutated();
/** assigns value to mutated_
*/
void setMutated(bool);
/** randomize all genes
*/
void randomize();
private:
/** fitness score
*/
double fitness_value_;
/** true if individual has changed since the last computation of the fitness score
*/
bool altered_;
/** true if indiviual has been mutated
*/
bool mutated_;
/** container for genes
*/
std::vector<GenericGene*> genes_;
};
}
#endif /* BALL_DOCKING_GENETICDOCK_GENETICINDIVIDUAL_H */
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