/usr/ is in libbpp-phyl-omics-dev 2.2.0-2.
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..
/usr/include/
/usr/include/Bpp/
/usr/include/Bpp/Seq/
/usr/include/Bpp/Seq/Io/
/usr/include/Bpp/Seq/Io/Maf/
/usr/include/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h
/usr/include/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h
/usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h
/usr/include/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h
/usr/include/Bpp/Seq/Io/Maf/AbstractPhylogenyReconstructionMafIterator.h
/usr/include/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.h
/usr/include/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h
/usr/include/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h
/usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.h
/usr/share/
/usr/share/doc/
/usr/share/doc/libbpp-phyl-omics-dev/
/usr/share/doc/libbpp-phyl-omics-dev/changelog.Debian.gz
/usr/share/doc/libbpp-phyl-omics-dev/changelog.gz
/usr/share/doc/libbpp-phyl-omics-dev/copyright
/usr/lib/
/usr/lib/x86_64-linux-gnu/
/usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.a
/usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.so