This file is indexed.

/usr/include/dune/pdelab/gridfunctionspace/vtk.hh is in libdune-pdelab-dev 2.5.0~20170124g7cf9f47a-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
#ifndef DUNE_PDELAB_GRIDFUNCTIONSPACE_VTK_HH
#define DUNE_PDELAB_GRIDFUNCTIONSPACE_VTK_HH

#include <vector>
#include <sstream>

#include <dune/common/exceptions.hh>

#include <dune/geometry/typeindex.hh>

#include <dune/localfunctions/common/interfaceswitch.hh>

#include <dune/typetree/visitor.hh>
#include <dune/typetree/traversal.hh>

#include <dune/pdelab/common/function.hh>
#include <dune/pdelab/common/vtkexport.hh>
#include <dune/pdelab/common/vtkexport.hh>
#include <dune/pdelab/gridfunctionspace/localfunctionspace.hh>
#include <dune/pdelab/gridfunctionspace/lfsindexcache.hh>
#include <dune/pdelab/gridfunctionspace/localvector.hh>

namespace Dune {

  template<typename GV>
  class VTKWriter;

  template<typename GV>
  class SubsamplingVTKWriter;

  template<typename GV>
  class VTKSequenceWriter;

  namespace PDELab {

    namespace vtk {

      namespace {

        template<typename VTKWriter>
        struct vtk_writer_traits;

        template<typename GV>
        struct vtk_writer_traits<Dune::VTKWriter<GV> >
        {
          typedef GV GridView;
        };

        template<typename GV>
        struct vtk_writer_traits<Dune::SubsamplingVTKWriter<GV> >
        {
          typedef GV GridView;
        };

        template<typename GV>
        struct vtk_writer_traits<Dune::VTKSequenceWriter<GV> >
        {
          typedef GV GridView;
        };

      }

      template<typename LFS, typename Data>
      class DGFTreeLeafFunction;

      template<typename LFS, typename Data>
      class DGFTreeVectorFunction;

      template<typename VTKWriter, typename Data>
      struct OutputCollector;


      //! Helper class for common data of a DGFTree.
      template<typename GFS, typename X, typename Pred>
      class DGFTreeCommonData
      {

        template<typename LFS, typename Data>
        friend class DGFTreeLeafFunction;

        template<typename LFS, typename Data>
        friend class DGFTreeVectorFunction;

        template<typename, typename>
        friend struct OutputCollector;

        typedef LocalFunctionSpace<GFS> LFS;
        typedef LFSIndexCache<LFS> LFSCache;
        typedef typename X::template ConstLocalView<LFSCache> XView;
        typedef LocalVector<typename X::ElementType> XLocalVector;
        using EntitySet = typename GFS::Traits::EntitySet;
        using Cell = typename EntitySet::Traits::Element;
        using IndexSet = typename EntitySet::Traits::IndexSet;
        typedef typename IndexSet::IndexType size_type;

        static const auto dim = EntitySet::dimension;

      public:

        typedef GFS GridFunctionSpace;
        typedef X Vector;
        typedef Pred Predicate;

        DGFTreeCommonData(const GFS& gfs, const X& x)
          : _lfs(gfs)
          , _lfs_cache(_lfs)
          , _x_view(x)
          , _x_local(_lfs.maxSize())
          , _index_set(gfs.entitySet().indexSet())
          , _current_cell_index(std::numeric_limits<size_type>::max())
        {}

      public:

        void bind(const Cell& cell)
        {
          auto cell_index = _index_set.uniqueIndex(cell);
          if (_current_cell_index == cell_index)
            return;

          _lfs.bind(cell);
          _lfs_cache.update();
          _x_view.bind(_lfs_cache);
          _x_view.read(_x_local);
          _x_view.unbind();
          _current_cell_index = cell_index;
        }

        LFS _lfs;
        LFSCache _lfs_cache;
        XView _x_view;
        XLocalVector _x_local;
        const IndexSet& _index_set;
        size_type _current_cell_index;

      };



      template<typename LFS, typename Data>
      class DGFTreeLeafFunction
        : public TypeTree::LeafNode
        , public GridFunctionInterface<GridFunctionTraits<
                                         typename LFS::Traits::GridView,
                                         typename BasisInterfaceSwitch<
                                           typename FiniteElementInterfaceSwitch<
                                             typename LFS::Traits::FiniteElement
                                             >::Basis
                                           >::RangeField,
                                             BasisInterfaceSwitch<
                                             typename FiniteElementInterfaceSwitch<
                                               typename LFS::Traits::FiniteElement
                                               >::Basis
                                             >::dimRange,
                                               typename BasisInterfaceSwitch<
                                               typename FiniteElementInterfaceSwitch<
                                                 typename LFS::Traits::FiniteElement
                                                 >::Basis
                                               >::Range
                                         >,
                                       DGFTreeLeafFunction<LFS,Data>
                                       >
      {

        typedef BasisInterfaceSwitch<
          typename FiniteElementInterfaceSwitch<
            typename LFS::Traits::FiniteElement
            >::Basis
          > BasisSwitch;

        typedef GridFunctionInterface<
          GridFunctionTraits<
            typename LFS::Traits::GridView,
            typename BasisSwitch::RangeField,
            BasisSwitch::dimRange,
            typename BasisSwitch::Range
            >,
          DGFTreeLeafFunction<LFS,Data>
          > BaseT;

      public:
        typedef typename BaseT::Traits Traits;

        DGFTreeLeafFunction (const LFS& lfs, const shared_ptr<Data>& data)
          : BaseT(lfs.gridFunctionSpace().dataSetType())
          , _lfs(lfs)
          , _data(data)
          , _basis(lfs.maxSize())
        {}

        // Evaluate
        void evaluate (const typename Traits::ElementType& e,
                       const typename Traits::DomainType& x,
                       typename Traits::RangeType& y) const
        {
          _data->bind(e);

          typedef FiniteElementInterfaceSwitch<
            typename LFS::Traits::FiniteElement
            > FESwitch;

          y = 0;

          FESwitch::basis(_lfs.finiteElement()).evaluateFunction(x,_basis);
          for (std::size_t i = 0; i < _lfs.size(); ++i)
            y.axpy(_data->_x_local(_lfs,i),_basis[i]);
        }

        //! get a reference to the GridView
        const typename Traits::GridViewType& gridView() const
        {
          return _lfs.gridFunctionSpace().gridView();
        }

        const LFS& localFunctionSpace() const
        {
          return _lfs;
        }

      private:

        const LFS& _lfs;
        const shared_ptr<Data> _data;
        mutable std::vector<typename Traits::RangeType> _basis;

      };



      template<typename LFS, typename Data>
      class DGFTreeVectorFunction
        : public TypeTree::LeafNode
        , public GridFunctionInterface<GridFunctionTraits<
                                         typename LFS::Traits::GridView,
                                         typename BasisInterfaceSwitch<
                                           typename FiniteElementInterfaceSwitch<
                                             typename LFS::ChildType::Traits::FiniteElement
                                             >::Basis
                                           >::RangeField,
                                         TypeTree::StaticDegree<LFS>::value,
                                         Dune::FieldVector<
                                           typename BasisInterfaceSwitch<
                                             typename FiniteElementInterfaceSwitch<
                                               typename LFS::ChildType::Traits::FiniteElement
                                               >::Basis
                                             >::RangeField,
                                           TypeTree::StaticDegree<LFS>::value
                                           >
                                         >,
                                       DGFTreeVectorFunction<LFS,Data>
                                       >
      {

        typedef BasisInterfaceSwitch<
          typename FiniteElementInterfaceSwitch<
            typename LFS::ChildType::Traits::FiniteElement
            >::Basis
          > BasisSwitch;

        static_assert(BasisSwitch::dimRange == 1,
                      "Automatic conversion to vector-valued function only supported for scalar components");

        typedef GridFunctionInterface<
          GridFunctionTraits<
            typename LFS::Traits::GridView,
            typename BasisSwitch::RangeField,
            TypeTree::StaticDegree<LFS>::value,
            Dune::FieldVector<
              typename BasisSwitch::RangeField,
              TypeTree::StaticDegree<LFS>::value
              >
            >,
          DGFTreeVectorFunction<LFS,Data>
          > BaseT;

      public:

        typedef typename BaseT::Traits Traits;
        typedef typename LFS::ChildType ChildLFS;
        typedef typename ChildLFS::Traits::FiniteElement::Traits::LocalBasisType::Traits::RangeFieldType RF;
        typedef typename ChildLFS::Traits::FiniteElement::Traits::LocalBasisType::Traits::RangeType RT;

        DGFTreeVectorFunction (const LFS& lfs, const shared_ptr<Data>& data)
          : BaseT(lfs.gridFunctionSpace().dataSetType())
          , _lfs(lfs)
          , _data(data)
          , _basis(lfs.maxSize())
        {}

        void evaluate (const typename Traits::ElementType& e,
                       const typename Traits::DomainType& x,
                       typename Traits::RangeType& y) const
        {
          _data->bind(e);

          typedef FiniteElementInterfaceSwitch<
            typename ChildLFS::Traits::FiniteElement
            > FESwitch;

          y = 0;

          for (std::size_t k = 0; k < TypeTree::degree(_lfs); ++k)
            {
              const ChildLFS& child_lfs = _lfs.child(k);
              FESwitch::basis(child_lfs.finiteElement()).evaluateFunction(x,_basis);

              for (std::size_t i = 0; i < child_lfs.size(); ++i)
                y[k] += _data->_x_local(child_lfs,i) * _basis[i];
            }
        }

        //! get a reference to the GridView
        const typename Traits::GridViewType& gridView() const
        {
          return _lfs.gridFunctionSpace().gridView();
        }

        const LFS& localFunctionSpace() const
        {
          return _lfs;
        }

      private:

        const LFS& _lfs;
        const shared_ptr<Data> _data;
        mutable std::vector<typename BasisSwitch::Range> _basis;

      };


      class DefaultFunctionNameGenerator
      {

      public:

        template<typename TreePath>
        std::string operator()(std::string component_name, TreePath tp) const
        {
          if (component_name.empty())
            {

              if (_prefix.empty() && _suffix.empty())
                {
                  DUNE_THROW(IOError,
                             "You need to either name all GridFunctionSpaces "
                             "written to the VTK file or provide a prefix / suffix.");
                }

              std::stringstream name_stream;

              if (!_prefix.empty())
                name_stream << _prefix << _separator;

              // Build a simple name based on the component's TreePath (e.g. 0_2_3)
              for (std::size_t i = 0; i < tp.size(); ++i)
                name_stream << (i > 0 ? _separator : "") << tp.element(i);

              if (!_suffix.empty())
                name_stream << _separator << _suffix;
              return name_stream.str();
            }
          else
            {
              // construct name from prefix, component name and suffix
              return _prefix + component_name + _suffix;
            }
        }

        DefaultFunctionNameGenerator& prefix(std::string prefix)
        {
          _prefix = prefix;
          return *this;
        }

        DefaultFunctionNameGenerator& suffix(std::string suffix)
        {
          _suffix = suffix;
          return *this;
        }

        DefaultFunctionNameGenerator& separator(std::string separator)
        {
          _separator = separator;
          return *this;
        }

        DefaultFunctionNameGenerator(std::string prefix = "",
                                        std::string suffix = "",
                                        std::string separator = "_")
          : _prefix(prefix)
          , _suffix(suffix)
          , _separator(separator)
        {}

      private:

        std::string _prefix;
        std::string _suffix;
        std::string _separator;

      };

      inline DefaultFunctionNameGenerator defaultNameScheme()
      {
        return DefaultFunctionNameGenerator();
      }


      template<typename VTKWriter, typename Data, typename NameGenerator>
      struct add_solution_to_vtk_writer_visitor
        : public TypeTree::DefaultVisitor
        , public TypeTree::DynamicTraversal
      {


        template<typename LFS, typename Child, typename TreePath>
        struct VisitChild
        {

          static const bool value =
            // Do not descend into children of VectorGridFunctionSpace
            !std::is_convertible<
              TypeTree::ImplementationTag<typename LFS::Traits::GridFunctionSpace>,
              VectorGridFunctionSpaceTag
            >::value;

        };

        //! Helper function for extracting (or building) the component name and adding
        //! the component to the VTKWriter.
        template<typename DGF, typename TreePath>
        void add_to_vtk_writer(const shared_ptr<DGF>& dgf, TreePath tp)
        {
          std::string name = name_generator(dgf->localFunctionSpace().gridFunctionSpace().name(),tp);
          switch (dgf->dataSetType())
            {
            case DGF::Output::vertexData:
              vtk_writer.addVertexData(std::make_shared<VTKGridFunctionAdapter<DGF> >(dgf,name.c_str()));
              break;
            case DGF::Output::cellData:
              vtk_writer.addCellData(std::make_shared<VTKGridFunctionAdapter<DGF> >(dgf,name.c_str()));
              break;
            default:
              DUNE_THROW(NotImplemented,"Unsupported data set type");
            }
        }

        //! Tag dispatch-based switch that creates a vector-valued function for a VectorGridFunctionSpace.
        /**
         * This version handles an actual VectorGridFunctionSpace.
         */
        template<typename LFS, typename TreePath>
        void add_vector_solution(const LFS& lfs, TreePath tp, VectorGridFunctionSpaceTag tag)
        {
          add_to_vtk_writer(std::make_shared<DGFTreeVectorFunction<LFS,Data> >(lfs,data),tp);
        }

        //! Tag dispatch-based switch that creates a vector-valued function for a VectorGridFunctionSpace.
        /**
         * This is the default version for different types of spaces that does nothing.
         */
        template<typename LFS, typename TreePath>
        void add_vector_solution(const LFS& lfs, TreePath tp, GridFunctionSpaceTag tag)
        {
          // do nothing here - not a vector space
        }

        // **********************************************************************
        // Visitor functions for adding DiscreteGridFunctions to VTKWriter
        //
        // The visitor functions contain a switch that will make them ignore
        // function spaces with a different underlying GridView type than
        // the VTKWriter.
        // This cannot happen in vanilla PDELab, but is required for MultiDomain
        // support
        // **********************************************************************

        // don't do anything if GridView types differ
        template<typename LFS, typename TreePath>
        typename std::enable_if<
          !std::is_same<
            typename LFS::Traits::GridFunctionSpace::Traits::GridView,
            typename vtk_writer_traits<VTKWriter>::GridView
            >::value
          >::type
        post(const LFS& lfs, TreePath tp)
        {
        }

        // don't do anything if GridView types differ
        template<typename LFS, typename TreePath>
        typename std::enable_if<
          !std::is_same<
            typename LFS::Traits::GridFunctionSpace::Traits::GridView,
            typename vtk_writer_traits<VTKWriter>::GridView
            >::value
          >::type
        leaf(const LFS& lfs, TreePath tp)
        {
        }

        //! Handle VectorGridFunctionSpace components in here.
        template<typename LFS, typename TreePath>
        typename std::enable_if<
          std::is_same<
            typename LFS::Traits::GridFunctionSpace::Traits::GridView,
            typename vtk_writer_traits<VTKWriter>::GridView
            >::value
          >::type
        post(const LFS& lfs, TreePath tp)
        {
          if (predicate(lfs, tp))
            add_vector_solution(lfs,tp,TypeTree::ImplementationTag<typename LFS::Traits::GridFunctionSpace>());
        }

        //! Create a standard leaf function for leaf GridFunctionSpaces.
        template<typename LFS, typename TreePath>
        typename std::enable_if<
          std::is_same<
            typename LFS::Traits::GridFunctionSpace::Traits::GridView,
            typename vtk_writer_traits<VTKWriter>::GridView
            >::value
          >::type
        leaf(const LFS& lfs, TreePath tp)
        {
          if (predicate(lfs, tp))
            add_to_vtk_writer(std::make_shared<DGFTreeLeafFunction<LFS,Data> >(lfs,data),tp);
        }


        add_solution_to_vtk_writer_visitor(VTKWriter& vtk_writer_, shared_ptr<Data> data_, const NameGenerator& name_generator_, const typename Data::Predicate& predicate_)
          : vtk_writer(vtk_writer_)
          , data(data_)
          , name_generator(name_generator_)
          , predicate(predicate_)
        {}

        VTKWriter& vtk_writer;
        shared_ptr<Data> data;
        const NameGenerator& name_generator;
        typename Data::Predicate predicate;

      };

      struct DefaultPredicate
      {
        template<typename LFS, typename TP>
        bool operator()(const LFS& lfs, TP tp) const
        {
          return true;
        }
      };

      template<typename VTKWriter, typename Data_>
      struct OutputCollector
      {

        //! Common data container (hierarchic LFS, global solution data etc.)
        typedef Data_ Data;

        typedef typename Data::GridFunctionSpace GFS;
        typedef typename Data::Vector Vector;
        typedef typename Data::Predicate Predicate;

        template<typename NameGenerator>
        OutputCollector& addSolution(const NameGenerator& name_generator)
        {

          add_solution_to_vtk_writer_visitor<VTKWriter,Data,NameGenerator> visitor(_vtk_writer,_data,name_generator,_predicate);
          TypeTree::applyToTree(_data->_lfs,visitor);
          return *this;
        }

        template<typename Factory, typename TreePath>
        OutputCollector& addCellFunction(Factory factory, TreePath tp, std::string name)
        {
          typedef typename std::remove_reference<decltype(*factory.create(_data->_lfs.child(tp),_data))>::type DGF;
          _vtk_writer.addCellData(std::make_shared<VTKGridFunctionAdapter<DGF> >(factory.create(_data->_lfs.child(tp),_data),name));
          return *this;
        }

        template<template<typename...> class Function, typename TreePath, typename... Params>
        OutputCollector& addCellFunction(TreePath tp, std::string name, Params&&... params)
        {
          using LFS = TypeTree::ChildForTreePath<typename Data::LFS,TreePath>;
          typedef Function<LFS,Data,Params...> DGF;
          _vtk_writer.addCellData(
            std::make_shared<VTKGridFunctionAdapter<DGF> >(
              std::make_shared<DGF>(
                TypeTree::child(_data->_lfs,tp)
                ),
                _data,
                std::forward<Params>(params)...
              ),
              name
            );
          return *this;
        }

        template<typename Factory, typename TreePath>
        OutputCollector& addVertexFunction(Factory factory, TreePath tp, std::string name)
        {
          typedef typename std::remove_reference<decltype(*factory.create(_data->_lfs.child(tp),_data))>::type DGF;
          _vtk_writer.addVertexData(std::make_shared<VTKGridFunctionAdapter<DGF> >(factory.create(_data->_lfs.child(tp),_data),name));
          return *this;
        }

        template<template<typename...> class Function, typename TreePath, typename... Params>
        OutputCollector& addVertexFunction(TreePath tp, std::string name, Params&&... params)
        {
          using LFS = TypeTree::ChildForTreePath<typename Data::LFS,TreePath>;
          typedef Function<LFS,Data,Params...> DGF;
          _vtk_writer.addVertexData(
            std::make_shared<VTKGridFunctionAdapter<DGF> >(
              std::make_shared<DGF>(
                TypeTree::child(_data->_lfs,tp)
                ),
                _data,
                std::forward<Params>(params)...
              ),
              name
            );
          return *this;
        }

        OutputCollector(VTKWriter& vtk_writer, const shared_ptr<Data>& data, const Predicate& predicate = Predicate())
          : _vtk_writer(vtk_writer)
          , _data(data)
          , _predicate(predicate)
        {}

        VTKWriter& _vtk_writer;
        shared_ptr<Data> _data;
        Predicate _predicate;

      };

    } // namespace vtk

    template<typename VTKWriter,
             typename GFS,
             typename X,
             typename NameGenerator = vtk::DefaultFunctionNameGenerator,
             typename Predicate = vtk::DefaultPredicate>
    vtk::OutputCollector<
      VTKWriter,
      vtk::DGFTreeCommonData<GFS,X,Predicate>
      >
    addSolutionToVTKWriter(VTKWriter& vtk_writer,
                           const GFS& gfs,
                           const X& x,
                           const NameGenerator& name_generator = vtk::defaultNameScheme(),
                           const Predicate& predicate = Predicate())
    {
      typedef vtk::DGFTreeCommonData<GFS,X,Predicate> Data;
      vtk::OutputCollector<VTKWriter,Data> collector(vtk_writer,std::make_shared<Data>(gfs,x),predicate);
      collector.addSolution(name_generator);
      return collector;
    }


  } // namespace PDELab
} // namespace Dune

#endif // DUNE_PDELAB_GRIDFUNCTIONSPACE_VTK_HH