/usr/include/genometools/annotationsketch/custom_track_gc_content_api.h is in libgenometools0-dev 1.5.9+ds-4.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 | /*
Copyright (c) 2008 Sascha Steinbiss <steinbiss@zbh.uni-hamburg.de>
Copyright (c) 2008 Center for Bioinformatics, University of Hamburg
Permission to use, copy, modify, and distribute this software for any
purpose with or without fee is hereby granted, provided that the above
copyright notice and this permission notice appear in all copies.
THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES
WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF
MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR
ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
*/
#ifndef CUSTOM_TRACK_GC_CONTENT_API_H
#define CUSTOM_TRACK_GC_CONTENT_API_H
#include "annotationsketch/custom_track_api.h"
/* Implements the <GtCustomTrack> interface. This custom track draws a plot of
the GC content of a given sequence in the displayed range. As a window
size for GC content calculation, <windowsize> is used. */
typedef struct GtCustomTrackGcContent GtCustomTrackGcContent;
/* Creates a new <GtCustomTrackGcContent> for sequence <seq> with length
<seqlen> of height <height> with windowsize <windowsize>.
A horizontal line is drawn for the percentage value <avg>,
with <avg> between 0 and 1. If <show_scale> is set to true, then a vertical
scale rule is drawn at the left end of the curve. */
GtCustomTrack* gt_custom_track_gc_content_new(const char *seq,
GtUword seqlen,
GtUword windowsize,
GtUword height,
double avg,
bool show_scale);
#endif
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