/usr/include/genometools/extended/bed_in_stream_api.h is in libgenometools0-dev 1.5.9+ds-4.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 | /*
Copyright (c) 2008, 2011 Gordon Gremme <gordon@gremme.org>
Permission to use, copy, modify, and distribute this software for any
purpose with or without fee is hereby granted, provided that the above
copyright notice and this permission notice appear in all copies.
THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES
WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF
MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR
ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
*/
#ifndef BED_IN_STREAM_API_H
#define BED_IN_STREAM_API_H
#include <stdio.h>
#include "extended/node_stream_api.h"
/* Implements the <GtNodeStream> interface. A <GtBEDInStream> allows one to
parse a BED file and return it as a stream of <GtGenomeNode> objects. */
typedef struct GtBEDInStream GtBEDInStream;
/* Return a <GtBEDInStream> object which subsequently reads the BED file with
the given <filename>. If <filename> equals <NULL>, the BED data is read from
<stdin>. */
GtNodeStream* gt_bed_in_stream_new(const char *filename);
/* Create BED features parsed by <bed_in_stream> with given <type> (instead of
the default "BED_feature"). */
void gt_bed_in_stream_set_feature_type(GtBEDInStream *bed_in_stream,
const char *type);
/* Create thick BED features parsed by <bed_in_stream> with given <type>
(instead of the default "BED_thick_feature"). */
void gt_bed_in_stream_set_thick_feature_type(GtBEDInStream
*bed_in_stream,
const char *type);
/* Create BED blocks parsed by <bed_in_stream> with given <type> (instead of
the default "BED_block"). */
void gt_bed_in_stream_set_block_type(GtBEDInStream *bed_in_stream,
const char *type);
#endif
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