/usr/include/genometools/extended/feature_in_stream_api.h is in libgenometools0-dev 1.5.9+ds-4.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 | /*
Copyright (c) 2013-2014 Daniel S. Standage <daniel.standage@gmail.com>
Permission to use, copy, modify, and distribute this software for any
purpose with or without fee is hereby granted, provided that the above
copyright notice and this permission notice appear in all copies.
THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES
WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF
MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR
ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
*/
#ifndef FEATURE_IN_STREAM_API_H
#define FEATURE_IN_STREAM_API_H
#include "extended/feature_index_api.h"
#include "extended/node_stream_api.h"
typedef struct GtFeatureInStream GtFeatureInStream;
/* Create a new <GtFeatureInStream> using the given <GtFeatureIndex> as the
source of a node stream. */
GtNodeStream* gt_feature_in_stream_new(GtFeatureIndex *fi);
/* Instruct <stream> to deliver GtRegionNode objects whose ranges are
specified such as with <##sequence-region> pragmas, rather than those
inferred from the features. Specifically, use
<gt_feature_index_get_orig_range_for_seqid> on the underlying feature
index rather than the default <gt_feature_index_get_range_for_seqid>. */
void gt_feature_in_stream_use_orig_ranges(GtFeatureInStream *stream);
#endif
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