This file is indexed.

/usr/include/linbox/algorithms/cra-early-single.h is in liblinbox-dev 1.4.2-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
/* Copyright (C) 2007 LinBox
 * written by JG Dumas
 *
 *
 *
 * ========LICENCE========
 * This file is part of the library LinBox.
 *
  * LinBox is free software: you can redistribute it and/or modify
 * it under the terms of the  GNU Lesser General Public
 * License as published by the Free Software Foundation; either
 * version 2.1 of the License, or (at your option) any later version.
 *
 * This library is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.	 See the GNU
 * Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public
 * License along with this library; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA
 * ========LICENCE========
 */

/*! @file algorithms/cra-early-single.h
 * @ingroup algorithms
 * @brief NO DOC
 */


#ifndef __LINBOX_cra_early_single_H
#define __LINBOX_cra_early_single_H

#include "linbox/util/timer.h"
#include <stdlib.h>
#include "linbox/integer.h"
#include "linbox/solutions/methods.h"
#include "linbox/algorithms/cra-domain.h"
#include <vector>
#include <utility>

namespace LinBox
{

	/*!  @brief NO DOC
	 * @ingroup CRA
	 *
	 */
	template<class Domain_Type>
	struct EarlySingleCRA {
		typedef Domain_Type			Domain;
		typedef typename Domain::Element DomainElement;
		typedef EarlySingleCRA<Domain> Self_t;

	protected:
		// PrimeProd*nextM_ is the modulus
		Integer 	primeProd_;
		Integer		nextM_;
		Integer 	residue_; 	// remainder to be reconstructed
		unsigned int    occurency_;	// number of equalities

		const unsigned int    EARLY_TERM_THRESHOLD;

#ifdef CRATIMING
		mutable Timer tInit, tIteration, tImaging, tIRecon, tOther;
		mutable CRATimer totalTime;
#endif

	public:

		EarlySingleCRA(const unsigned long EARLY=DEFAULT_EARLY_TERM_THRESHOLD) :
			primeProd_(1U),
			nextM_(1U),
			occurency_(0U),
			EARLY_TERM_THRESHOLD((unsigned)EARLY-1)
		{
#ifdef CRATIMING
			clearTimers();
			totalTime.clear();
#endif
		}

#if 0
		EarlySingleCRA(const Self_t& c) :
			primeProd_(c.primeProd_),
			nextM_(c.nextM_),
			residue_(c.residue_),
			occurency_(c.occurency_),
			EARLY_TERM_THRESHOLD(c.EARLY_TERM_THRESHOLD)
		{}
#endif

		virtual void initialize (const Integer& D, const Integer& e)
		{
#ifdef CRATIMING
			tInit.clear();
			tInit.start();
#endif
			primeProd_ = D;
			nextM_ = 1U;
			residue_ = e;
			occurency_ = 1;
#ifdef CRATIMING
			tInit.stop();
			totalTime.ttInit += tInit;
#endif
		}

		virtual void initialize (const Domain& D, const DomainElement& e)
		{
#ifdef CRATIMING
			tInit.clear();
			tInit.start();
#endif
			D.characteristic( primeProd_ );
			nextM_ = 1U;
			D.convert( residue_, e);
			occurency_ = 1;
#ifdef CRATIMING
			tInit.stop();
			totalTime.ttInit += tInit;
#endif
		}

		virtual Integer& result(Integer& d)
		{
			return d=residue_;
		}

		// virtual Integer& result(Integer& n, Integer& d) = 0 ; // rational pure virtual

		virtual Integer& getResidue(Integer& r )
		{
			return r= residue_;
		}

		virtual Integer& getModulus(Integer& m)
		{

#ifdef CRATIMING
			tOther.clear();
			tOther.start();
#endif
			m = primeProd_ * nextM_;
#ifdef CRATIMING
			tOther.stop();
			totalTime.ttOther += tOther;
#endif
			return m;
		}

		virtual bool terminated()
		{
			return occurency_>EARLY_TERM_THRESHOLD;
		}

		virtual void progress (const Integer& D, const Integer& e)
		{
			// Precondition : initialize has been called once before
			// linbox_check(occurency_ > 0);
#ifdef CRATIMING
			tIRecon.clear();
			tIRecon.start();
#endif
			primeProd_ *= nextM_;
			nextM_ =D;
			Integer u0 = residue_ % D;//0
			Integer u1 = e % D;//e
			Integer m0 = primeProd_;//1
			if (u0 == u1) {
				++occurency_;
			}
			else {
				occurency_ = 1;
				inv(m0, m0, D); // res <-- m0^{-1} mod m1//1
				u0 = u1 - u0;           // tmp <-- (u1-u0)//e
				u0 *= m0;       // res <-- (u1-u0)( m0^{-1} mod m1 )//e
				u0 %= D;
				Integer tmp(u0);//e
				if (u0 < 0)
					tmp += D;//e+D
				else
					tmp -= D;//e-D
				if (absCompare(u0,tmp) > 0) u0 = tmp;
				u0 *= primeProd_;          // res <-- (u1-u0)( m0^{-1} mod m1 ) m0       and res <= (m0m1-m0)
				residue_ += u0;   // res <-- u0 + (u1-u0)( m0^{-1} mod m1 ) m0  and res <  m0m1
			}
#ifdef CRATIMING
			tIRecon.stop();
			totalTime.ttIRecon += tIRecon;
#endif
		}

		virtual void progress (const Domain& D, const DomainElement& e)
		{
			// Precondition : initialize has been called once before
			// linbox_check(occurency_ > 0);
#ifdef CRATIMING
			tIRecon.clear();
			tIRecon.start();
#endif
			primeProd_ *= nextM_;
			D.characteristic( nextM_ );

			DomainElement u0;
			if (D.areEqual( D.init(u0, residue_), e)) {
				++occurency_;
			}
			else {
				occurency_ = 1;

				D.negin(u0);       	// u0  <-- -u0
				D.addin(u0, e);    	// u0  <-- e-u0

				DomainElement m0;
				D.init(m0, primeProd_);
				D.invin(m0);       	// m0  <-- m0^{-1} mod nextM_
				D.mulin(u0, m0);   	// u0  <-- (e-u0)( m0^{-1} mod nextM_ )

				Integer res;
				D.convert(res, u0);	// res <-- (e-u0)( m0^{-1} mod nextM_ )
				// and res < nextM_

				Integer tmp(res);
				tmp -= nextM_;
				if (absCompare(res,tmp)>0) res = tmp; // Normalize

				res *= primeProd_;	// res <-- (e-u0)( m0^{-1} mod nextM_ ) m0
				// and res <= (m0.nextM_-m0)

				residue_ += res;	// <-- u0 + (e-u0)( m0^{-1} mod nextM_ ) m0
				// and res <  m0.nextM_
			}
#ifdef CRATIMING
			tIRecon.stop();
			totalTime.ttIRecon += tIRecon;
#endif
		}

		virtual bool noncoprime(const Integer& i) const
		{
			Integer g;
			return ( (gcd(g, i, nextM_) != 1) || (gcd(g, i, primeProd_) != 1) );
		}


		virtual ~EarlySingleCRA() {}

#ifdef CRATIMING
		void clearTimers() const
		{
			tInit.clear();
			//tIteration.clear();
			//tImaging.clear();
			tIRecon.clear();
			tOther.clear();
		}
	public:
		virtual inline std::ostream& printTime(const Timer& timer, const char* title, std::ostream& os, const char* pref = "") const
		{
			if (timer.count() > 0) {
				os << pref << title;
				for (int i=strlen(title)+strlen(pref); i<28; i++)
					os << ' ';
				return os << timer << std::endl;
			}
			else
				return os;
		}

		virtual inline std::ostream& printCRATime(const CRATimer& timer, const char* title, std::ostream& os) const
		{
			printTime(timer.ttInit, "Init", os, title);
			//printTime(timer.ttImaging, "Imaging", os, title);
			//printTime(timer.ttIteration, "Iteration", os, title);
			printTime(timer.ttIRecon, "Integer reconstruction", os, title);
			printTime(timer.ttOther, "Other", os, title);
			return os;
		}

		virtual std::ostream& reportTimes(std::ostream& os) const
		{
			printCRATime(totalTime, "CRA Time", os);
			return os;
		}
#endif

	};


}

#endif //__LINBOX_cra_early_single_H


// vim:sts=8:sw=8:ts=8:noet:sr:cino=>s,f0,{0,g0,(0,:0,t0,+0,=s
// Local Variables:
// mode: C++
// tab-width: 8
// indent-tabs-mode: nil
// c-basic-offset: 8
// End: