/usr/include/mash/HashList.h is in libmash-dev 1.1.1-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 | // Copyright © 2015, Battelle National Biodefense Institute (BNBI);
// all rights reserved. Authored by: Brian Ondov, Todd Treangen,
// Sergey Koren, and Adam Phillippy
//
// See the LICENSE.txt file included with this software for license information.
#ifndef HashList_h
#define HashList_h
#include "hash.h"
#include <vector>
class HashList
{
public:
HashList() {use64 = true;}
HashList(int kmerSize) {use64 = kmerSize > 16;}
hash_u at(int index) const;
void clear();
void resize(int size);
void set32(int index, uint32_t value);
void set64(int index, uint64_t value);
void setUse64(bool use64New) {use64 = use64New;}
int size() const {return use64 ? hashes64.size() : hashes32.size();}
void sort();
void push_back32(hash32_t hash) {hashes32.push_back(hash);}
void push_back64(hash64_t hash) {hashes64.push_back(hash);}
bool get64() const {return use64;}
private:
bool use64;
std::vector<hash32_t> hashes32;
std::vector<hash64_t> hashes64;
};
#endif
|