/usr/include/minimap/sdust.h is in libminimap-dev 0.2-3+b1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 | #ifndef SDUST_H
#define SDUST_H
struct sdust_buf_s;
typedef struct sdust_buf_s sdust_buf_t;
#ifdef __cplusplus
extern "C" {
#endif
// the simple interface
uint64_t *sdust(const uint8_t *seq, int l_seq, int T, int W, int *n);
// the following interface dramatically reduce heap allocations when sdust is frequently called.
sdust_buf_t *sdust_buf_init(void);
void sdust_buf_destroy(sdust_buf_t *buf);
const uint64_t *sdust_core(const uint8_t *seq, int l_seq, int T, int W, int *n, sdust_buf_t *buf);
#ifdef __cplusplus
}
#endif
#endif
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