/usr/include/ncbi-vdb/align/align.h is in libncbi-vdb-dev 2.8.1+dfsg-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/
#ifndef _h_align_align_
#define _h_align_align_
#ifndef _h_klib_defs_
#include <klib/defs.h>
#endif
#ifdef __cplusplus
extern "C" {
#endif
/*==========================================================================
* ALIGN types, constants
*/
/*--------------------------------------------------------------------------
* ploidy
*/
typedef uint32_t NCBI_align_ploidy;
/*--------------------------------------------------------------------------
* ro_type
* ref-offset type
*/
typedef uint8_t NCBI_align_ro_type;
enum
{
NCBI_align_ro_normal = 0, /* normal ref-offset */
NCBI_align_ro_soft_clip = 1, /* soft-clipping */
NCBI_align_ro_intron_plus = 2, /* intron on positive strand */
NCBI_align_ro_intron_minus = 3, /* intron on negative strand */
NCBI_align_ro_intron_unknown = 4, /* intron strand not specified */
NCBI_align_ro_complete_genomics = 5 /* (future) */
};
#ifdef __cplusplus
}
#endif
#endif /* _h_align_align_ */
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