This file is indexed.

/usr/include/ncbi-vdb/klib/path.h is in libncbi-vdb-dev 2.8.1+dfsg-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
/*===========================================================================
*
*                            PUBLIC DOMAIN NOTICE
*               National Center for Biotechnology Information
*
*  This software/database is a "United States Government Work" under the
*  terms of the United States Copyright Act.  It was written as part of
*  the author's official duties as a United States Government employee and
*  thus cannot be copyrighted.  This software/database is freely available
*  to the public for use. The National Library of Medicine and the U.S.
*  Government have not placed any restriction on its use or reproduction.
*
*  Although all reasonable efforts have been taken to ensure the accuracy
*  and reliability of the software and data, the NLM and the U.S.
*  Government do not and cannot warrant the performance or results that
*  may be obtained by using this software or data. The NLM and the U.S.
*  Government disclaim all warranties, express or implied, including
*  warranties of performance, merchantability or fitness for any particular
*  purpose.
*
*  Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/

#ifndef _h_klib_path_
#define _h_klib_path_

#ifndef _h_klib_extern_
#include <klib/extern.h>
#endif

#ifndef _h_klib_defs_
#include <klib/defs.h>
#endif

#include <stdarg.h>

#ifdef __cplusplus
extern "C" {
#endif
    
/*--------------------------------------------------------------------------
 * forwards
 */
struct String;


/*--------------------------------------------------------------------------
 * KPath
 *  represents an unbound object query key
 *  may be created from a simple file-system path,
 *  a more formal URN or URL,
 *  or other modes of creation
 *
 *  a path will have these parts:
 *    scheme       : a scheme for retrieval
 *    auth         : login name for authentication
 *    host         : authoritative source
 *    port         : port for connecting with host
 *    path         : host-relative path
 *    query        : parameters for interpretation
 *    fragment     : internal component of object
 *    proj         : project id
 *    name         : alternate or primary name
 *
 *  file-system paths with no modifying parameters
 *  will be given standard "file" scheme. paths having
 *  parameters will be given the scheme "ncbi-file".
 *
 *  standard networking schemes ( "http", "ftp", etc. )
 *  are supported.
 *
 *  NCBI accessions are given the scheme "ncbi-acc".
 *
 *  NCBI remote object id paths receive scheme "ncbi-obj".
 */
typedef struct KPath KPath;


/* MakePath
 *  make a path object from a string conforming to
 *  either a standard POSIX path or a URI
 *
 *  "new_path" [ OUT ] - return parameter for new path object
 *
 *  "path_str" [ IN ] - a UTF-8 NUL-terminated string
 *  representing a POSIX path or URI, or
 *  a string_printf compatible format string
 *
 *  "path_fmt" [ IN ] and "args" [ IN ] - a UTF-8 NUL-terminated fmt string
 *  compatible with string_vprintf, plus argument list
 *
 *  Examples:
 *      "ncbi-file:/home/my-name/data-files"
 *      "ncbi-file://win-server/archive/secure/read12345?encrypted"
 *      "ncbi-file:///c/scanned-data/0001/file.sra?enc&pwfile=/c/Users/JamesMcCoy/ncbi.pwd"

    KLIB_EXTERN rc_t CC MakePath_v1 ( KPath ** new_path, const char *path_str, ... );
    KLIB_EXTERN rc_t CC VMakePath_v1 ( KPath ** new_path, const char *path_fmt, va_list args );
 */
KLIB_EXTERN KPath * CC MakePath ( ctx_t ctx, const char *path_str, ... );
KLIB_EXTERN KPath * CC VMakePath ( ctx_t ctx, const char *path_fmt, va_list args );

/* MakeSysPath
 *  make a path object from an OS native filesystem path string
 *
 *  "new_path" [ OUT ] - return parameter for new path object
 *
 *  "sys_path" [ IN ] - a UTF-8 NUL-terminated string
 *  representing a native filesystem path
 *
 *  "wide_sys_path" [ IN ] - a wide NUL-terminated string
 *  representing a native filesystem path, where
 *  wchar_t is either USC-2 or UTF-32 depending upon libraries


KLIB_EXTERN KPath * CC MakeSysPath ( ctx_t ctx, const char *sys_path );
KLIB_EXTERN KPath * CC VMakeSysPath ( ctx_t ctx, const wchar_t * wide_sys_path );
 */

/* MakeAccPath - TEMPORARY
 *  takes a textual accession representation
 *  creates a VPath representing an accession
 *
 *  "new_path" [ OUT ] - return parameter for new path object
 *
 *  "acc" [ IN ] - a NUL-terminated ASCII fmt string

    LIB_EXPORT rc_t CC MakeAccPath_v1 ( KPath ** new_path, const char * acc, ... );
    LIB_EXPORT rc_t CC VMakeAccPath_v1 ( KPath ** new_path, const char * fmt, va_list args );
 */

KLIB_EXTERN KPath * CC MakeAccPath ( ctx_t ctx, const char * acc, ... );
KLIB_EXTERN KPath * CC VMakeAccPath ( ctx_t ctx, const char * fmt, va_list args );

/* MakeOidPath - TEMPORARY
 *  takes an integer oid
 *  creates a VPath representing an obj-id
 *
 *  "new_path" [ OUT ] - return parameter for new path object
 *
 *  "oid" [ IN ] - a non-zero object id

    LIB_EXPORT rc_t CC MakeOidPath_v1 ( KPath ** new_path, uint32_t oid )
 */

KLIB_EXTERN KPath * CC MakeOidPath ( ctx_t ctx, uint32_t oid );


/* AddRef
 * Release
 *  ignores NULL references
 */
KLIB_EXTERN KPath * CC KPathDuplicate ( const KPath *self, ctx_t ctx );
KLIB_EXTERN rc_t CC KPathRelease ( const KPath *self );


/* IsFSCompatible
 *  asks if the path can be used with the OS' filesystems
 */
KLIB_EXTERN bool CC KPathIsFSCompatible ( const KPath *self, ctx_t ctx );


/* FromUri
 *  asks if the path was created from a formal URI
 */
KLIB_EXTERN bool CC KPathFromUri ( const KPath *self, ctx_t ctx );

/* Read*
 *  read the various parts
 *  copies out data into user-supplied buffer
 *
 *  "buffer" [ OUT ] and "buffer_size" [ IN ] - output buffer
 *  for data read. if sufficient space is available, the copy
 *  will be NUL-terminated.
 *
 *  "num_read" [ OUT, NULL OKAY ] - optional return parameter
 *  for the number of valid bytes in "buffer" after a successful
 *  read. on failure due to insufficient buffer, contains the
 *  number of bytes required for transfer.
 */
KLIB_EXTERN size_t CC KPathReadUri ( const KPath *self, ctx_t ctx,
                                     char * buffer, size_t buffer_size );
    KLIB_EXTERN size_t CC KPathReadScheme ( const KPath * self, ctx_t ctx,
                                        char * buffer, size_t buffer_size );
KLIB_EXTERN size_t CC KPathReadAuth ( const KPath *self, ctx_t ctx,
                                      char * buffer, size_t buffer_size );
KLIB_EXTERN size_t CC KPathReadHost ( const KPath *self, ctx_t ctx,
                                      char * buffer, size_t buffer_size );
KLIB_EXTERN size_t CC KPathReadPortName ( const KPath *self, ctx_t ctx,
                                          char * buffer, size_t buffer_size );
KLIB_EXTERN size_t CC KPathReadPath ( const KPath *self, ctx_t ctx,
                                      char * buffer, size_t buffer_size );
KLIB_EXTERN size_t CC KPathReadQuery ( const KPath *self, ctx_t ctx,
                                       char * buffer, size_t buffer_size );
KLIB_EXTERN size_t CC KPathReadParam ( const KPath *self, ctx_t ctx, 
                                       const char * param, char * buffer, size_t buffer_size );
KLIB_EXTERN size_t CC KPathReadFragment ( const KPath *self, ctx_t ctx,
                                          char * buffer, size_t buffer_size );


/* MakeUri
 *  convert a VPath into a URI
 */
KLIB_EXTERN struct String const * CC KPathMakeUri ( const KPath *self, ctx_t ctx );



/* MakeString
 *  convert a KPath into a String
 *  respects original source of path,
 *  i.e. does not add scheme unnecessarily
 */
KLIB_EXTERN struct String const * CC KPathMakeString ( const KPath *self, ctx_t ctx );


/* Get*
 *  retrieves internal parts
 *  returns pointers to internal String data
 *  Strings remain valid while "self" is valid
 */
KLIB_EXTERN struct String *  CC KPathGetScheme ( const KPath *self, ctx_t ctx, struct String * str );
KLIB_EXTERN struct String *  CC KPathGetAuth ( const KPath *self, ctx_t ctx, struct String * str );
KLIB_EXTERN struct String *  CC KPathGetHost ( const KPath *self, ctx_t ctx, struct String * str );
KLIB_EXTERN struct String *  CC KPathGetPortName ( const KPath *self, ctx_t ctx, struct String * str );
KLIB_EXTERN uint16_t CC KPathGetPortNum ( const KPath *self, ctx_t ctx );
KLIB_EXTERN struct String *  CC KPathGetPath ( const KPath *self, ctx_t ctx, struct String * str );
KLIB_EXTERN struct String *  CC KPathGetQuery ( const KPath *self, ctx_t ctx, struct String * str );
KLIB_EXTERN struct String *  CC KPathGetParam ( const KPath *self, ctx_t ctx, const char * param, struct String * str );
KLIB_EXTERN struct String *  CC KPathGetFragment ( const KPath *self, ctx_t ctx, struct String * str );
/* TEMPORARY */
KLIB_EXTERN uint32_t CC KPathGetOid ( const KPath *self, ctx_t ctx );

/* legacy support */
/*
#define KPathMake LegacyKPathMake
KLIB_EXTERN rc_t KPathMake ( KPath ** new_path, const char * posix_path );
#define KPathMakeFmt LegacyKPathMakeFmt
rc_t KPathMakeFmt ( KPath ** new_path, const char * fmt, ... );
#define KPathMakeVFmt LegacyKPathMakeVFmt
rc_t KPathMakeVFmt ( KPath ** new_path, const char * fmt, va_list args );
#define KPathMakeSysPath LegacyKPathMakeSysPath
KLIB_EXTERN rc_t KPathMakeSysPath ( KPath ** new_path, const char * sys_path );
*/

#ifdef __cplusplus
}
#endif

#endif /* _h_vfs_path_ */