/usr/include/ncbi-vdb/sra/pacbio.h is in libncbi-vdb-dev 2.8.1+dfsg-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/
#ifndef _h_sra_pacbio_
#define _h_sra_pacbio_
#ifndef _h_klib_defs_
#include <klib/defs.h>
#endif
#ifdef __cplusplus
extern "C" {
#endif
/*==========================================================================
* PACBIO types, constants
*/
/* hole status for pacbio spots
*/
#define sra_read_filter_t "INSDC:SRA:read_filter"
typedef uint8_t PACBIO_HOLE_STATUS;
enum
{
SRA_PACBIO_HOLE_SEQUENCING = 0,
SRA_PACBIO_HOLE_ANTIHOLE = 1,
SRA_PACBIO_HOLE_FIDUCIAL = 2,
SRA_PACBIO_HOLE_SUSPECT = 3,
SRA_PACBIO_HOLE_ANTIMIRROR = 4,
SRA_PACBIO_HOLE_FDZMW = 5,
SRA_PACBIO_HOLE_FBZMW = 6,
SRA_PACBIO_HOLE_ANTIBEAMLET = 7,
SRA_PACBIO_HOLE_OUTSIDEFOV = 8
};
#ifdef __cplusplus
}
#endif
#endif /* _h_sra_pacbio_ */
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