/usr/include/ncbi-vdb/sra/srapath.h is in libncbi-vdb-dev 2.8.1+dfsg-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/
#ifndef _h_sra_srapath_
#define _h_sra_srapath_
#ifndef _h_sra_extern_
#include <sra/extern.h>
#endif
#ifndef _h_klib_callconv_
#include <klib/callconv.h>
#endif
#ifndef _h_klib_defs_
#include <klib/defs.h>
#endif
#ifdef __cplusplus
extern "C" {
#endif
#define TOOLS_USE_SRAPATH 0
/*--------------------------------------------------------------------------
* forwards
*/
struct KNamelist;
struct KDirectory;
/*--------------------------------------------------------------------------
* SRAPath
* manages accession -> path conversion
*/
typedef struct SRAPath SRAPath;
/* Make
* create path manager
*
* the path manager should already be configured with
* standard search paths, but can be augmented by using
* the Add*Path messages.
*
* "dir" [ IN, NULL OKAY ] - optional root directory to use
* attaches a new reference
*/
SRA_EXTERN rc_t CC SRAPathMake ( SRAPath **pm, struct KDirectory const *dir );
/* AddRef
* Release
*/
SRA_EXTERN rc_t CC SRAPathAddRef ( const SRAPath *self );
SRA_EXTERN rc_t CC SRAPathRelease ( const SRAPath *self );
/* Version
* returns the library version
*/
SRA_EXTERN rc_t CC SRAPathVersion ( const SRAPath *self, uint32_t *version );
/* Clear
* forget existing server and volume paths for the default repository
*/
SRA_EXTERN rc_t CC SRAPathClear ( SRAPath *self );
/* AddRepPath
* add a replication path to the default repository
*
* "rep" [ IN ] - NUL-terminated server search path
* may be a compound path with ':' separator characters, e.g.
* "/panfs/traces01:/panfs/traces31"
*
* NB - servers are searched in the order provided,
* first to last, until one of them satisfies a request,
* at which time the successful server is placed at the
* head of the search path.
*/
SRA_EXTERN rc_t CC SRAPathAddRepPath ( SRAPath *self, const char *rep );
/* AddVolPath
* add a volume path to the default repository
*
* "vol" [ IN ] - NUL-terminated volume search path
* may be a compound path with ':' separator characters, e.g.
* "sra2:sra1:sra0"
*
* NB - volumes are searched in the order provided,
* first to last. they are never re-ordered.
*/
SRA_EXTERN rc_t CC SRAPathAddVolPath ( SRAPath *self, const char *vol );
/* Full
* creates full path from server, volume & accession
*
* "rep" [ IN ] - NUL terminated full path of replication
* server, e.g. "/panfs/traces01"
*
* "vol" [ IN ] - NUL terminated relative path of volume,
* e.g. "sra2"
*
* "accession" [ IN ] - NUL terminated run accession,
* e.g. "SRR000001"
*
* "path" [ OUT ] and "path_max" [ IN ] - return buffer for
* NUL-terminated full path to accession.
*/
SRA_EXTERN rc_t CC SRAPathFull ( const SRAPath *self, const char *rep,
const char *vol, const char *accession, char *path, size_t path_max );
/* Test
* returns true if path appears to be accession
* the test is a heuristic, and may return false positives
*
* "path" [ IN ] - NUL terminated path to run
*/
SRA_EXTERN bool CC SRAPathTest ( const SRAPath *self, const char *path );
/* Find
* finds location of run within rep-server/volume matrix
*
* "accession" [ IN ] - NUL terminated run accession,
* e.g. "SRR000001"
*
* "path" [ OUT ] and "path_max" [ IN ] - return buffer for
* NUL-terminated full path to accession.
*
* returns 0 if path exists, rc state rcNotFound if
* path cannot be found, and rcInsufficient if buffer is
* too small.
*/
SRA_EXTERN rc_t CC SRAPathFind ( const SRAPath *self,
const char *accession, char *path, size_t path_max );
/* List
* list all runs known to SRAPath
* this can be VERY SLOW due to the large number of runs
*
* "runs" [ OUT ] - return parameter for ordered list of accessions
*
* "deep" [ IN ] - when false, list only first responding server
*/
SRA_EXTERN rc_t CC SRAPathList ( const SRAPath *self, struct KNamelist **runs, bool deep );
#ifdef __cplusplus
}
#endif
#endif /* _h_sra_srapath_ */
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