/usr/lib/ncbi-vdb/align/qstat.vschema is in libncbi-vdb2 2.8.1+dfsg-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 | /*===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/
/*==========================================================================
* VDB Quality Statistics Table
*/
version 1;
include '/usr/lib/ncbi-vdb/vdb/vdb.vschema';
include '/usr/lib/ncbi-vdb/ncbi/ncbi.vschema';
table NCBI:align:tbl:qstat #1.0
{
/* SPOT_GROUP
*/
extern column < ascii > zip_encoding SPOT_GROUP;
/* CYCLE
* machine cycle
*/
extern column < U32 > izip_encoding CYCLE;
/* KMER
* use dimer
*/
extern column INSDC:dna:text KMER;
/* HPRUN
* homopolymer run
* number of bases of the same type preceding the current base
*/
extern column < INSDC:coord:len > izip_encoding HPRUN;
/* GC_CONTENT
* number of G's or C's in the 7 bases preceding the current base
*/
extern column < U32 > izip_encoding GC_CONTENT;
/* ORIG_QUAL
* original quality scores
*/
extern column < INSDC:quality:phred > zip_encoding ORIG_QUAL;
/* MAX_QUAL
* max. quality score in read
*/
extern column < INSDC:quality:phred > zip_encoding MAX_QUAL;
/* NREAD
* number of the read
*/
extern column < U8 > zip_encoding NREAD;
/* TOTAL_COUNT
* total count of observed events
*/
extern column < U32 > izip_encoding TOTAL_COUNT;
/* MISMATCH_COUNT
* count of observed mismatches
*/
extern column < U32 > izip_encoding MISMATCH_COUNT;
};
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