This file is indexed.

/usr/include/ngs/itf/ReadGroupItf.hpp is in libngs-sdk-dev 1.3.0-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
/*===========================================================================
*
*                            PUBLIC DOMAIN NOTICE
*               National Center for Biotechnology Information
*
*  This software/database is a "United States Government Work" under the
*  terms of the United States Copyright Act.  It was written as part of
*  the author's official duties as a United States Government employee and
*  thus cannot be copyrighted.  This software/database is freely available
*  to the public for use. The National Library of Medicine and the U.S.
*  Government have not placed any restriction on its use or reproduction.
*
*  Although all reasonable efforts have been taken to ensure the accuracy
*  and reliability of the software and data, the NLM and the U.S.
*  Government do not and cannot warrant the performance or results that
*  may be obtained by using this software or data. The NLM and the U.S.
*  Government disclaim all warranties, express or implied, including
*  warranties of performance, merchantability or fitness for any particular
*  purpose.
*
*  Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/

#ifndef _hpp_ngs_itf_read_groupitf_
#define _hpp_ngs_itf_read_groupitf_

#ifndef _hpp_ngs_itf_refcount_
#include <ngs/itf/Refcount.hpp>
#endif

struct NGS_ReadGroup_v1;

namespace ngs
{

    /*----------------------------------------------------------------------
     * forwards
     */
    class ReadItf;
    class StringItf;
    class StatisticsItf;

    /*----------------------------------------------------------------------
     * ReadGroupItf
     */
    class   ReadGroupItf : public Refcount < ReadGroupItf, NGS_ReadGroup_v1 >
    {
    public:

        StringItf * getName () const
            throw ( ErrorMsg );
#if READ_GROUP_SUPPORTS_READS
        ReadItf * getRead ( const char * readId )
            throw ( ErrorMsg );
        ReadItf * getReads ( uint32_t categories )
            throw ( ErrorMsg );
#endif
		StatisticsItf * getStatistics () const 
            throw ( ErrorMsg );
        bool nextReadGroup ()
            throw ( ErrorMsg );
    };

} // namespace ngs

#endif // _hpp_ngs_itf_read_groupitf_