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/usr/lib/pkgconfig/omnithread3.pc is in libomnithread3-dev 4.1.6-2.1+b1.

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prefix=/usr
exec_prefix=${prefix}
libdir=${exec_prefix}/lib
includedir=${prefix}/include

Name: omnithread3
Description: Threading library for omniORB4
Version: 4.1.6
Requires:
Libs: -L${libdir} -lomnithread
Cflags: -D__x86_64__ -D__linux__ -D__OSVERSION__=2 -I${includedir}