/usr/include/pbbam/BamRecordTag.h is in libpbbam-dev 0.7.4+ds-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 | // Copyright (c) 2016, Pacific Biosciences of California, Inc.
//
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted (subject to the limitations in the
// disclaimer below) provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// * Redistributions in binary form must reproduce the above
// copyright notice, this list of conditions and the following
// disclaimer in the documentation and/or other materials provided
// with the distribution.
//
// * Neither the name of Pacific Biosciences nor the names of its
// contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE
// GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
// BIOSCIENCES AND ITS CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED
// WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
// OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
// DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
// SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
// LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
// USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
// ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
// OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
// OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
// SUCH DAMAGE.
//
// File Description
/// \file BamRecordTag.h
/// \brief Defines the BamRecordTag enum.
//
// Author: Derek Barnett
#ifndef BAMRECORDTAG_H
#define BAMRECORDTAG_H
namespace PacBio {
namespace BAM {
enum class BamRecordTag
{
ALT_LABEL_QV
, ALT_LABEL_TAG
, BARCODE_QUALITY
, BARCODES
, CONTEXT_FLAGS
, DELETION_QV
, DELETION_TAG
, HOLE_NUMBER
, INSERTION_QV
, IPD
, LABEL_QV
, MERGE_QV
, NUM_PASSES
, PKMEAN
, PKMEAN_2
, PKMID
, PKMID_2
, PRE_PULSE_FRAMES
, PULSE_CALL
, PULSE_CALL_WIDTH
, PULSE_MERGE_QV
, PULSE_WIDTH
, QUERY_END
, QUERY_START
, READ_ACCURACY
, READ_GROUP
, SCRAP_REGION_TYPE
, SCRAP_ZMW_TYPE
, SNR
, START_FRAME
, SUBSTITUTION_QV
, SUBSTITUTION_TAG
//
// not tags per se, but faking these here to simplify data fetching
//
, QUAL
, SEQ
};
} // namespace BAM
} // namespace PacBio
#endif // BAMRECORDTAG_H
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