/usr/include/pbbam/BarcodeQuery.h is in libpbbam-dev 0.7.4+ds-1.
This file is owned by root:root, with mode 0o644.
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// File Description
/// \file BarcodeQuery.h
/// \brief Defines the BarcodeQuery class.
//
// Author: Derek Barnett
#ifndef BARCODEQUERY_H
#define BARCODEQUERY_H
#include "pbbam/Config.h"
#include "pbbam/internal/QueryBase.h"
#include <vector>
namespace PacBio {
namespace BAM {
/// \brief The BarcodeQuery class provides iterable access to a DataSet's %BAM
/// records, limiting results to those matching a particular barcode.
///
/// Example:
/// \include code/BarcodeQuery.txt
///
/// \note Currently, all %BAM files must have a corresponding ".pbi" index file.
/// Use BamFile::EnsurePacBioIndexExists before creating the query if one
/// may not be present.
///
class PBBAM_EXPORT BarcodeQuery : public internal::IQuery
{
public:
/// \brief Creates a new BarcodeQuery, limiting record results to only those
/// annotated with a particular barcode ID.
///
/// \param[in] barcode filtering criteria
/// \param[in] dataset input data source(s)
///
/// \sa BamRecord::Barcodes
///
/// \throws std::runtime_error on failure to open/read underlying %BAM or PBI
/// files.
///
BarcodeQuery(const int16_t barcode, const DataSet& dataset);
~BarcodeQuery(void);
public:
/// \brief Main iteration point for record access.
///
/// Most client code should not need to use this method directly. Use
/// iterators instead.
///
bool GetNext(BamRecord& r);
private:
struct BarcodeQueryPrivate;
std::unique_ptr<BarcodeQueryPrivate> d_;
};
} // namespace BAM
} // namespace PacBio
#endif // BARCODEQUERY_H
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