/usr/include/pbbam/DataSetXsd.h is in libpbbam-dev 0.7.4+ds-1.
This file is owned by root:root, with mode 0o644.
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//
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted (subject to the limitations in the
// disclaimer below) provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// * Redistributions in binary form must reproduce the above
// copyright notice, this list of conditions and the following
// disclaimer in the documentation and/or other materials provided
// with the distribution.
//
// * Neither the name of Pacific Biosciences nor the names of its
// contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE
// GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
// BIOSCIENCES AND ITS CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED
// WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
// OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
// DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
// SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
// LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
// USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
// ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
// OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
// OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
// SUCH DAMAGE.
//
// File Description
/// \file DataSetXsd.h
/// \brief Defines the XSD- and namespace-related classes for DataSetXML.
//
// Author: Derek Barnett
#ifndef DATASETXSD_H
#define DATASETXSD_H
#include "pbbam/Config.h"
#include <map>
#include <string>
namespace PacBio {
namespace BAM {
/// \brief The XsdType enum defines the supported XSD namespaces.
///
enum class XsdType
{
NONE
, AUTOMATION_CONSTRAINTS
, BASE_DATA_MODEL
, COLLECTION_METADATA
, COMMON_MESSAGES
, DATA_MODEL
, DATA_STORE
, DATASETS
, DECL_DATA
, PART_NUMBERS
, PRIMARY_METRICS
, REAGENT_KIT
, RIGHTS_AND_ROLES
, SAMPLE_INFO
, SEEDING_DATA
};
/// \brief The NamespaceInfo class provides XML namespace info (prefix & URI).
///
class PBBAM_EXPORT NamespaceInfo
{
public:
/// \brief Creates an empty entry.
///
/// This constructor only exists for STL container compatibility.
///
NamespaceInfo(void);
/// \brief Creates a valid info entry.
NamespaceInfo(const std::string& name,
const std::string& uri);
public:
/// \brief Fetches namespace name (i.e. prefix)
const std::string& Name(void) const { return name_; }
/// \brief Fetches namespace URI.
const std::string& Uri(void) const { return uri_; }
private:
std::string name_;
std::string uri_;
};
/// \brief The NamespaceRegistry class provides a per-dataset registry of XML
/// namespace information.
///
/// This is used to format XML output - properly prefixing element labels with
/// namespace as appropriate.
///
class PBBAM_EXPORT NamespaceRegistry
{
public:
/// \name Constructors & Related Methods
/// \{
NamespaceRegistry(void);
NamespaceRegistry(const NamespaceRegistry& other);
NamespaceRegistry(NamespaceRegistry&& other);
NamespaceRegistry& operator=(const NamespaceRegistry& other);
NamespaceRegistry& operator=(NamespaceRegistry&& other);
~NamespaceRegistry(void);
/// \}
public:
/// \name Registry Access
/// \{
/// \brief Fetches namespace info for the dataset's default XSD type.
const NamespaceInfo& DefaultNamespace(void) const;
/// \brief Fetches dataset's default XSD type.
XsdType DefaultXsd(void) const;
/// \brief Fetches namespace info for the requested XSD type.
const NamespaceInfo& Namespace(const XsdType& xsd) const;
/// \brief Registers namespace info for a particular XSD type.
void Register(const XsdType& xsd, const NamespaceInfo& namespaceInfo);
/// \brief Updates dataset's default XSD type.
void SetDefaultXsd(const XsdType& xsd);
/// \brief Fetches the XSD type for \p elementLabel.
XsdType XsdForElement(const std::string& elementLabel) const;
/// \brief Fetches the XSD type for a particular URI.
XsdType XsdForUri(const std::string& uri) const;
/// \}
private:
std::map<XsdType, NamespaceInfo> data_;
XsdType defaultXsdType_;
};
} // namespace PacBio
} // namespace BAM
#endif // DATASETXSD_H
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