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// Copyright (c) 2016, Pacific Biosciences of California, Inc.
//
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted (subject to the limitations in the
// disclaimer below) provided that the following conditions are met:
//
//  * Redistributions of source code must retain the above copyright
//    notice, this list of conditions and the following disclaimer.
//
//  * Redistributions in binary form must reproduce the above
//    copyright notice, this list of conditions and the following
//    disclaimer in the documentation and/or other materials provided
//    with the distribution.
//
//  * Neither the name of Pacific Biosciences nor the names of its
//    contributors may be used to endorse or promote products derived
//    from this software without specific prior written permission.
//
// NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE
// GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
// BIOSCIENCES AND ITS CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED
// WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
// OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
// DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
// SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
// LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
// USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
// ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
// OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
// OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
// SUCH DAMAGE.
//
// File Description
/// \file FastaSequence.h
/// \brief Defines the FastaSequence class.
//
// Author: Derek Barnett

#ifndef FASTASEQUENCE_H
#define FASTASEQUENCE_H

#include <string>

namespace PacBio {
namespace BAM {

///
/// \brief The FastaSequence class represents a FASTA record (name & bases)
///
class FastaSequence
{
public:
    /// \name Constructors & Related Methods
    /// \{

    ///
    /// \brief FastaSequence
    /// \param name
    /// \param bases
    ///
    explicit FastaSequence(std::string name, std::string bases);

    FastaSequence(void) = default;
    FastaSequence(const FastaSequence&) = default;
    FastaSequence(FastaSequence&&) = default;
    FastaSequence& operator=(const FastaSequence&) = default;
    FastaSequence& operator=(FastaSequence&&) = default;
    ~FastaSequence(void) = default;

    /// \}

public:
    /// \name Attributes
    /// \{

    ///
    /// \brief Name
    /// \return
    ///
    std::string Name(void) const;

    ///
    /// \brief Bases
    /// \return
    ///
    std::string Bases(void) const;

    /// \}

private:
    std::string name_;
    std::string bases_;
};

} // namespace BAM
} // namespace PacBio

#include "internal/FastaSequence.inl"

#endif // FASTASEQUENCE_H