/usr/include/pbbam/LocalContextFlags.h is in libpbbam-dev 0.7.4+ds-1.
This file is owned by root:root, with mode 0o644.
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// File Description
/// \file LocalContextFlags.h
/// \brief Defines the LocalContextFlags enum & helper method(s).
//
// Author: Lance Hepler
#ifndef LOCALCONTEXTFLAGS_H
#define LOCALCONTEXTFLAGS_H
#include "pbbam/Config.h"
namespace PacBio {
namespace BAM {
/// \brief The LocalContextFlags enum defines the flags that can be used
/// to describe a subread's "local context", i.e. whether it is
/// flanked by barcodes/adapters or its pass orientation.
///
enum LocalContextFlags : uint8_t
{
NO_LOCAL_CONTEXT = 0, ///< No context information available
ADAPTER_BEFORE = 1, ///< Adapter precedes subread
ADAPTER_AFTER = 2, ///< Adapter follows subread
BARCODE_BEFORE = 4, ///< Barcode precedes subread
BARCODE_AFTER = 8, ///< Barcode follows subread
FORWARD_PASS = 16, ///< Subread's orientation is 'forward pass'
REVERSE_PASS = 32 ///< Subread's orientation is 'reverse pass'
};
/// \returns a LocalContextFlags value containing the result of the bitwise-OR
/// operation of \p lhs and \p rhs.
// constexpr is implicitly inline
constexpr LocalContextFlags operator|(const LocalContextFlags lhs, const LocalContextFlags rhs)
{
return static_cast<LocalContextFlags>(static_cast<int>(lhs) | static_cast<int>(rhs));
}
} // namespace BAM
} // namespace PacBio
#endif // LOCALCONTEXTFLAGS_H
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