/usr/include/pbbam/QualityValue.h is in libpbbam-dev 0.7.4+ds-1.
This file is owned by root:root, with mode 0o644.
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// disclaimer below) provided that the following conditions are met:
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// * Redistributions of source code must retain the above copyright
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// * Redistributions in binary form must reproduce the above
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// with the distribution.
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//
// File Description
/// \file QualityValue.h
/// \brief Defines the QualityValue class.
//
// Author: Derek Barnett
#ifndef QUALITYVALUE_H
#define QUALITYVALUE_H
#include "pbbam/Config.h"
#include <string>
#include <vector>
namespace PacBio {
namespace BAM {
/// \brief The QualityValue class represents a FASTQ-compatible quality value.
///
/// Integers are clamped to [0, 93] (corresponding to ASCII printable chars
/// [!-~]).
///
/// Use QualityValue::FromFastq for constructing entries from FASTQ encoding
/// characters. Otherwise, the resulting QualityValue will be interpreted using
/// the character's numeric value (ignoring the FASTQ offset of 33).
///
class PBBAM_EXPORT QualityValue
{
public:
static const uint8_t MAX;
public:
/// \name Conversion Methods
/// \{
/// \brief Creates a QualityValue from a FASTQ-encoding character.
///
/// \param[in] c FASTQ character
/// \returns quality value representing (c - 33)
///
static QualityValue FromFastq(const char c);
/// \}
public:
/// \name Constructors & Related Methods
/// \{
/// \brief Creates a QualityValue with specified value.
///
/// \param[in] value quality value
///
QualityValue(const uint8_t value = 0);
QualityValue(const QualityValue& other);
~QualityValue(void);
/// \}
public:
/// \name Conversion Methods
/// \{
/// \returns the FASTQ-encoding char for this QualityValue
char Fastq(void) const;
/// \returns the integer value of this QualityValue
operator uint8_t(void) const;
/// \}
private:
uint8_t value_;
};
} // namespace BAM
} // namespace PacBio
#include "pbbam/internal/QualityValue.inl"
#endif // QUALITYVALUE_H
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