/usr/include/pbbam/SamTagCodec.h is in libpbbam-dev 0.7.4+ds-1.
This file is owned by root:root, with mode 0o644.
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//
// All rights reserved.
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// modification, are permitted (subject to the limitations in the
// disclaimer below) provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
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// * Redistributions in binary form must reproduce the above
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// with the distribution.
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// from this software without specific prior written permission.
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// GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
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//
// File Description
/// \file SamTagCodec.h
/// \brief Defines the SamTagCodec class.
//
// Author: Derek Barnett
#ifndef SAMTAGCODEC_H
#define SAMTAGCODEC_H
#include "pbbam/Config.h"
#include "pbbam/TagCollection.h"
#include <string>
namespace PacBio {
namespace BAM {
/// \brief The SamTagCodec class provides text-based encoding/decoding of %BAM
/// tag data.
///
/// \note SamTagCodec is mostly an implementation and/or testing detail, and may
/// be removed from the public API.
///
class PBBAM_EXPORT SamTagCodec
{
public:
/// \name Tag Collection Methods
/// \{
/// \brief Creates a TagCollection from SAM-formatted tag data.
///
/// \param[in] tagString SAM-formmated string
/// \returns resulting tag collection
///
static TagCollection Decode(const std::string& tagString);
/// \brief Creates SAM-formatted string from a TagCollection.
///
/// \param[in] tags TagCollection containing tag data
/// \returns SAM-formatted string
///
static std::string Encode(const PacBio::BAM::TagCollection& tags);
};
} // namespace BAM
} // namespace PacBio
#endif // SAMTAGCODEC_H
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