/usr/include/pbbam/ZmwGroupQuery.h is in libpbbam-dev 0.7.4+ds-1.
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// File Description
/// \file ZmwGroupQuery.h
/// \brief Defines the ZmwGroupQuery class.
//
// Author: Derek Barnett
#ifndef ZMWGROUPQUERY_H
#define ZMWGROUPQUERY_H
#include "pbbam/internal/QueryBase.h"
#include <vector>
namespace PacBio {
namespace BAM {
/// \brief The ZmwGroupQuery class provides iterable access to a DataSet's
/// %BAM records, limiting results to those matching a ZMW hole number
/// whitelist, and grouping those results by hole number.
///
/// Example:
/// \include code/ZmwGroupQuery.txt
///
/// \note Currently, all %BAM files must have a corresponding ".pbi" index file.
/// Use BamFile::EnsurePacBioIndexExists before creating the query if one
/// may not be present.
///
class PBBAM_EXPORT ZmwGroupQuery : public internal::IGroupQuery
{
public:
/// \brief Creates a new ZmwGroupQuery, limiting record results to only
/// those matching a ZMW hole number criterion.
///
/// \param[in] zmwWhitelist vector of allowed ZMW hole numbers
/// \param[in] dataset input data source(s)
///
/// \throws std::runtime_error on failure to open/read underlying %BAM or
/// PBI files.
///
ZmwGroupQuery(const std::vector<int32_t>& zmwWhitelist,
const DataSet& dataset);
~ZmwGroupQuery(void);
public:
/// \brief Main iteration point for record access.
///
/// Most client code should not need to use this method directly. Use
/// iterators instead.
///
bool GetNext(std::vector<BamRecord>& records);
private:
struct ZmwGroupQueryPrivate;
std::unique_ptr<ZmwGroupQueryPrivate> d_;
};
} // namespace BAM
} // namespace PacBio
#endif // ZMWGROUPQUERY_H
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