/usr/include/pbbam/internal/DataSetElement.h is in libpbbam-dev 0.7.4+ds-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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//
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted (subject to the limitations in the
// disclaimer below) provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// * Redistributions in binary form must reproduce the above
// copyright notice, this list of conditions and the following
// disclaimer in the documentation and/or other materials provided
// with the distribution.
//
// * Neither the name of Pacific Biosciences nor the names of its
// contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE
// GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
// BIOSCIENCES AND ITS CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED
// WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
// OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
// DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
// SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
// LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
// USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
// ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
// OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
// OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
// SUCH DAMAGE.
// Author: Derek Barnett
#ifndef DATASETELEMENT_H
#define DATASETELEMENT_H
#include "pbbam/DataSetXsd.h"
#include <boost/utility/string_ref.hpp>
#include <algorithm>
#include <map>
#include <stdexcept>
#include <string>
#include <vector>
#include <cassert>
namespace PacBio {
namespace BAM {
namespace internal {
class XmlName
{
// qualified name
// |
// --------------
// <pbns:node_name >
// ---- ---------
// | |
// prefix local name
public:
XmlName(const std::string& fullName, bool verbatim = false);
XmlName(const std::string& localName, const std::string& prefix);
XmlName(const XmlName& other);
XmlName(XmlName&& other);
XmlName& operator=(const XmlName& other);
XmlName& operator=(XmlName&& other);
~XmlName(void);
public:
bool operator==(const XmlName& other) const;
bool operator!=(const XmlName& other) const;
public:
const boost::string_ref LocalName(void) const;
const boost::string_ref Prefix(void) const;
const std::string& QualifiedName(void) const;
bool Verbatim(void) const;
private:
std::string qualifiedName_;
size_t prefixSize_;
size_t localNameOffset_;
size_t localNameSize_;
bool verbatim_;
};
struct FromInputXml { };
class DataSetElement
{
public:
DataSetElement(const std::string& label, const XsdType& xsd = XsdType::NONE);
DataSetElement(const std::string& label, const FromInputXml& fromInputXml, const XsdType& xsd = XsdType::NONE);
DataSetElement(const DataSetElement& other);
DataSetElement(DataSetElement&& other);
DataSetElement& operator=(const DataSetElement& other);
DataSetElement& operator=(DataSetElement&& other);
virtual ~DataSetElement(void);
public:
bool operator==(const DataSetElement& other) const;
bool operator!=(const DataSetElement& other) const;
public:
const std::string& Attribute(const std::string& name) const;
std::string& Attribute(const std::string& name);
const std::map<std::string, std::string>& Attributes(void) const;
std::map<std::string, std::string>& Attributes(void);
bool HasAttribute(const std::string& name) const;
const std::vector<DataSetElement>& Children(void) const;
std::vector<DataSetElement>& Children(void);
bool HasChild(const std::string& label) const;
const boost::string_ref LocalNameLabel(void) const;
const boost::string_ref PrefixLabel(void) const;
const std::string& QualifiedNameLabel(void) const;
bool IsVerbatimLabel(void) const;
const std::string& Text(void) const;
std::string& Text(void);
const XsdType& Xsd(void) const;
public:
void Attribute(const std::string& name, const std::string& value);
void Label(const std::string& label);
void Text(const std::string& text);
public:
size_t NumAttributes(void) const;
size_t NumChildren(void) const;
public:
void AddChild(const DataSetElement& e);
void RemoveChild(const DataSetElement& e);
template<typename T>
const T& Child(size_t index) const;
template<typename T>
T& Child(size_t index);
template<typename T>
const T& Child(const std::string& label) const;
template<typename T>
T& Child(const std::string& label);
template<typename T>
const T& operator[](size_t index) const;
template<typename T>
T& operator[](size_t index);
template<typename T = DataSetElement>
const T& operator[](const std::string& label) const;
template<typename T = DataSetElement>
T& operator[](const std::string& label);
protected:
static const std::string& SharedNullString(void);
public:
const std::string& ChildText(const std::string& label) const;
std::string& ChildText(const std::string& label);
void ChildText(const std::string& label, const std::string& text);
protected:
XsdType xsd_;
XmlName label_;
std::string text_;
std::map<std::string, std::string> attributes_;
std::vector<DataSetElement> children_;
private:
int IndexOf(const std::string& label) const;
};
} // namespace internal
} // namespace BAM
} // namespace PacBio
#include "pbbam/internal/DataSetElement.inl"
#endif // DATASETELEMENT_H
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