/usr/include/pbbam/internal/Interval.inl is in libpbbam-dev 0.7.4+ds-1.
This file is owned by root:root, with mode 0o644.
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// * Redistributions of source code must retain the above copyright
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// * Redistributions in binary form must reproduce the above
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//
// File Description
/// \file Interval.inl
/// \brief Inline implementations for the Interval class.
//
// Author: Derek Barnett
#include "pbbam/Interval.h"
namespace PacBio {
namespace BAM {
template<typename T>
inline Interval<T>::Interval(void)
: data_(boost::icl::discrete_interval<T>::right_open(0,0))
{ }
template<typename T>
inline Interval<T>::Interval(const T val)
: data_(boost::icl::discrete_interval<T>::right_open(val,val+1))
{ }
template<typename T>
inline Interval<T>::Interval(const T start, const T stop)
: data_(boost::icl::discrete_interval<T>::right_open(start,stop))
{ }
template<typename T>
inline Interval<T>::Interval(const Interval<T>& other)
: data_(boost::icl::discrete_interval<T>::right_open(other.Start(), other.Stop()))
{ }
template<typename T>
inline bool Interval<T>::operator==(const Interval<T>& other) const
{ return data_ == other.data_; }
template<typename T>
inline bool Interval<T>::operator!=(const Interval<T>& other) const
{ return !(data_ == other.data_); }
template<typename T>
inline bool Interval<T>::CoveredBy(const Interval<T>& other) const
{ return boost::icl::within(data_, other.data_); }
template<typename T>
inline bool Interval<T>::Covers(const Interval<T>& other) const
{ return boost::icl::contains(data_, other.data_); }
template<typename T>
inline bool Interval<T>::Intersects(const Interval<T>& other) const
{ return boost::icl::intersects(data_, other.data_); }
template<typename T>
inline bool Interval<T>::IsValid(void) const
{ return !boost::icl::is_empty(data_); }
template<typename T>
inline size_t Interval<T>::Length(void) const
{ return boost::icl::length(data_); }
template<typename T>
inline T Interval<T>::Start(void) const
{ return data_.lower(); }
template<typename T>
inline Interval<T>& Interval<T>::Start(const T& start)
{
data_ = boost::icl::discrete_interval<T>::right_open(start, data_.upper());
return *this;
}
template<typename T>
inline T Interval<T>::Stop(void) const
{ return data_.upper(); }
template<typename T>
inline Interval<T>& Interval<T>::Stop(const T& stop)
{
data_ = boost::icl::discrete_interval<T>::right_open(data_.lower(), stop);
return *this;
}
} // namespace BAM
} // namespace PacBio
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