/usr/include/pbseq/pbdata/FASTQReader.hpp is in libpbdata-dev 0~20161219-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 | #ifndef _BLASR_FASTQ_READER_HPP_
#define _BLASR_FASTQ_READER_HPP_
#include "FASTASequence.hpp"
#include "FASTAReader.hpp"
#include "FASTQSequence.hpp"
#include "qvs/QualityValue.hpp"
class FASTQReader : public FASTAReader {
public:
FASTQReader();
int GetNext(FASTASequence &seq); // return 1 if suceed.
unsigned char phredQVtoPacbioQV(unsigned char phredQV);
int GetNext(FASTQSequence &seq);
int Advance(int nSteps);
};
#endif // _BLASR_FASTQ_READER_HPP_
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