/usr/include/pbseq/pbdata/GFFFile.hpp is in libpbdata-dev 0~20161219-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 | #ifndef _BLASR_GFF_FILE_HPP_
#define _BLASR_GFF_FILE_HPP_
#include <iostream>
#include <fstream>
#include <sstream>
#include <string>
#include <vector>
#include "utils.hpp"
#include "Types.h"
class GFFEntry {
public:
std::string name, type, source;
UInt start, end;
char strand;
float score;
std::string frame;
std::string attributes;
GFFEntry(std::string & _name, std::string & _source,
std::string & _type, UInt & _start, UInt & _end,
float & _score, char & _strand,
std::string & _frame, std::string _attributes);
};
class GFFFile {
public:
std::vector<GFFEntry> entries;
void ReadAll(std::string & gffFileName);
};
#endif
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