/usr/include/pbseq/pbdata/SeqUtils.hpp is in libpbdata-dev 0~20161219-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | #ifndef _BLASR_SEQ_UTILS_HPP_
#define _BLASR_SEQ_UTILS_HPP_
#include "DNASequence.hpp"
template< typename T_Sequence>
int OnlyACTG(T_Sequence &seq);
template< typename T_Sequence>
DNALength CountMasked(T_Sequence &seq);
template< typename T_Sequence>
int CountNotMasked(T_Sequence &seq);
#include "SeqUtilsImpl.hpp"
#endif // _BLASR_SEQ_UTILS_HPP_
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