/usr/include/pbseq/pbdata/sam/ReadGroup.hpp is in libpbdata-dev 0~20161219-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 | #ifndef _BLASR_SAM_READ_GROUP_HPP_
#define _BLASR_SAM_READ_GROUP_HPP_
#include <string>
/*
* Minimal components of read group. Define only required items. Use
* if memory is scarce.
*/
#include "SAMKeywordValuePair.hpp"
class SAMReadGroup {
public:
std::string id;
void StoreValues(std::vector<SAMKeywordValuePair> &kvPairs,
uint64_t lineNumber = 0);
};
/*
* Full read group. Use when all data are required.
*/
class SAMFullReadGroup : public SAMReadGroup {
public:
std::string centerName;
std::string description;
std::string date;
std::string flowOrder;
std::string keySequence;
std::string library;
std::string processingProgram;
uint64_t insertSize;
std::string platform;
std::string platformUnit;
std::string sample;
void StoreValues(std::vector<SAMKeywordValuePair> &kvPairs,
uint64_t lineNumber = 0);
};
#endif
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