/usr/include/pbseq/pbdata/utils/SMRTReadUtils.hpp is in libpbdata-dev 0~20161219-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | #ifndef _BLASR_SMRT_READ_UTILS_HPP_
#define _BLASR_SMRT_READ_UTILS_HPP_
#include <stdlib.h>
#include "../FASTQSequence.hpp"
#include "../StringUtils.hpp"
void GetSMRTReadCoordinates(FASTQSequence &seq, int &x, int &y);
void GetSpringfieldHoleNumberFromTitle(FASTQSequence &seq,
unsigned int &holeNumber);
// Parse a PBIRead name of format movie/holeNumber/s_e, or /movie/holeNumber
// and get movieName, holeNumber.
bool ParsePBIReadName(std::string &readName, std::string &movieName, int &holeNumber);
#endif
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