/usr/lib/petscdir/3.7.5/x86_64-linux-gnu-complex-debug/bin/update.py is in libpetsc-complex-3.7.5-dbg 3.7.5+dfsg1-4+b1.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 | #! /usr/bin/python
import commands
import os
import re
import sys
def getPETScDirectory():
'''Checks PETSC_DIR and sets if not set'''
if 'PETSC_DIR' in os.environ:
return os.environ['PETSC_DIR']
else:
return os.path.realpath(os.path.dirname(os.path.dirname(sys.argv[0])))
def isGNUPatch(patch):
'''Returns 1 if it is GNU patch or equivilent, exception if cannot run'''
if sys.platform.startswith('sunos') or sys.platform.startswith('alpha'):
try:
output = commands.getoutput(patch+' --help')
log.write(output+'\n')
except:
raise RuntimeError('Unable to run '+patch+' command')
if output.find('gnu.org') == -1: return 0
return 1
# should only apply patch if it truly has something new in it. Keep checksum somewhere?
def updatePatches():
'''Updates the source code from any available patches'''
log = open('patches.log','w')
patch = 'patch'
for i in range(1,len(sys.argv)):
if sys.argv[i].startswith('--patch='):
patch = sys.argv[i][8:]
sys.stdout.write('Using '+patch+' program to apply patches\n')
log.write('Using '+patch+' program to apply patches\n')
try:
if not isGNUPatch(patch):
raise RuntimeError('Patch program provided with --patch='+patch+' must be gnu patch')
except:
raise RuntimeError('Cannot run patch program provided with --patch='+patch)
if not isGNUPatch(patch):
raise RuntimeError('Solaris and Alpha require GNU patch, run with --patch=<full path of gnu patch> \n')
# Get PETSc current version number
dir = getPETScDirectory()
if not os.path.exists(os.path.join(dir, 'include', 'petscversion.h')):
raise RuntimeError('Invalid PETSc directory '+str(dir)+' it may not exist?')
fd = open(os.path.join(dir, 'include', 'petscversion.h'))
pv = fd.read()
fd.close()
import re
try:
majorversion = re.compile(' PETSC_VERSION_MAJOR[ ]*([0-9]*)').search(pv).group(1)
minorversion = re.compile(' PETSC_VERSION_MINOR[ ]*([0-9]*)').search(pv).group(1)
subminorversion = re.compile(' PETSC_VERSION_SUBMINOR[ ]*([0-9]*)').search(pv).group(1)
except:
raise RuntimeError('Unable to find version information from include/petscversion.h\nYour PETSc files are likely incomplete, get the PETSc code again')
version=str(majorversion)+'.'+str(minorversion)+'.'+str(subminorversion)
patches1 = 'patches1'
patchfile1 = 'http://ftp.mcs.anl.gov/pub/petsc/patches/petsc_patch_all-'+version
for i in range(1,len(sys.argv)):
if sys.argv[i].startswith('--patch1='):
patches1 = sys.argv[i][9:]
if patches1.startswith('ftp://'):
patchfile1 = patches1
patches1 = 'patches1'
if patches1 == 'patches1':
sys.stdout.write('Downloading patches '+patchfile1+' for PETSc version '+version+'\n')
log.write('Downloading patches '+patchfile1+' for PETSc version '+version+'\n')
patches1 = 'patches1'
import urllib
try:
urllib.urlretrieve(patchfile1, patches1)
except Exception, e:
raise RuntimeError('Unable to download patches. Perhaps you are off the network?\n '+str(e))
else:
log.write('Using '+patches1+' for PETSc patches\n')
patches2 = 'patches2'
patchfile2 = 'http://ftp.mcs.anl.gov/pub/petsc/patches/buildsystem_patch_all-'+version
for i in range(1,len(sys.argv)):
if sys.argv[i].startswith('--patch2='):
patches2 = sys.argv[i][9:]
if patches2.startswith('ftp://'):
patchfile2 = patches2
patches2 = 'patches2'
if patches2 == 'patches2':
sys.stdout.write('Downloading patches '+patchfile2+' for PETSc version '+version+' BuildSystem\n')
log.write('Downloading patches '+patchfile2+' for PETSc version '+version+' BuildSystem\n')
import urllib
try:
urllib.urlretrieve(patchfile2, patches2)
except:
raise RuntimeError('Unable to download patches. Perhaps you are off the network?\n')
else:
log.write('Using '+patches2+' for PETSc BuildSystem patches\n')
try:
(status1,output1) = commands.getstatusoutput(patch+' -Np1 < '+patches1)
except:
raise RuntimeError('Unable to apply patch from '+patches1+' with '+patch)
log.write(output1+'\n')
if patches1 == 'patches1':
os.unlink(patches1)
try:
(status1,output1) = commands.getstatusoutput('cd python/BuildSystem; '+patch+' -Np1 < '+os.path.join('..','..',patches2))
except:
raise RuntimeError('Unable to apply patch from '+patches2+' with '+patch)
log.write(output1+'\n')
if patches2 == 'patches2':
os.unlink(patches2)
sys.stdout.write('Applied patches for version '+version+'\n')
log.write('Applied patches for version '+version+'\n')
log.close()
if __name__ == '__main__':
updatePatches()
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